Locus 1204

Sequence ID 3L_DroMel_CAF1
Location 3,432,103 – 3,432,207
Length 104
Max. P 0.991200
window1895

overview

Window 5

Location 3,432,103 – 3,432,207
Length 104
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 94.70
Mean single sequence MFE -24.46
Consensus MFE -22.32
Energy contribution -22.20
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.78
Structure conservation index 0.91
SVM decision value 2.25
SVM RNA-class probability 0.991200
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3432103 104 + 23771897
UCUCUU----UUACAGCUGUCUGAUAAAUUGAAAUGUCGGCUUAUCGGCUAGAUUAAUCGGAUUAAUUUAAAUGCCAGCUUAUCGCAGGCAUAAAUUAGGCGUUAAUA
......----.....((((((((((.((((.....(((((....)))))..)))).)))))))(((((((..((((.((.....)).))))))))))))))....... ( -25.30)
>DroSec_CAF1 47382 104 + 1
UCUCUU----UUACAGCUGUCUGAUAAAUUGAAAUGUCGGCUUAUCGGCCAGAUUAAUCGGAUUAAUUUAAAUGCCAGCUUAUCGCAGGCAUAAAUUAGGCGUUAAUA
......----......(((.(((((((.((((....)))).))))))).)))(((((.((..((((((((..((((.((.....)).)))))))))))).))))))). ( -25.70)
>DroSim_CAF1 36533 104 + 1
UCUCUU----UUACAGCUGUCUGAUAAAUUGAAAUGUCGGCUUAUCGGCCAGAUUAAUCGGAUUAAUUUAAAUGCCAGCUUAUCGCAGGCAUAAAUUAGGCGUUAAUA
......----......(((.(((((((.((((....)))).))))))).)))(((((.((..((((((((..((((.((.....)).)))))))))))).))))))). ( -25.70)
>DroEre_CAF1 49286 104 + 1
UCUCUU----UUACAGCUGUCUGAUAAAUUGAAAUGUCGGCUUAUCGGUUAGAUUAAUCGGAUUAAUUUAAAUGCCAGCUUAUCGCAGGCAUAAAUUAAACAGAAAUA
......----......(((((((((((.((((....)))).)))))))((((((((((...))))))))))(((((.((.....)).))))).......))))..... ( -22.00)
>DroYak_CAF1 46625 108 + 1
UCUCUUUUUUUUACAGCUGCCUGAUAAAUUGAAAUGUCGGCUUAUCGGCUAGAUUAAUCGGAUUAAUUUAAAUGCCAGCUUAUCGCAGGCAUAAAUUAAGCAUAAAUA
...............((((((.(((((.((((....)))).))))))))(((((((((...))))))))).(((((.((.....)).)))))......)))....... ( -23.60)
>consensus
UCUCUU____UUACAGCUGUCUGAUAAAUUGAAAUGUCGGCUUAUCGGCUAGAUUAAUCGGAUUAAUUUAAAUGCCAGCUUAUCGCAGGCAUAAAUUAGGCGUUAAUA
................(((.(((((((.((((....)))).))))))).)))((((((....((((((((..((((.((.....)).))))))))))))..)))))). (-22.32 = -22.20 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:06 2006