Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,414,218 – 3,414,320 |
Length | 102 |
Max. P | 0.989235 |
Location | 3,414,218 – 3,414,320 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.52 |
Mean single sequence MFE | -35.77 |
Consensus MFE | -22.21 |
Energy contribution | -26.02 |
Covariance contribution | 3.81 |
Combinations/Pair | 1.03 |
Mean z-score | -3.26 |
Structure conservation index | 0.62 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3414218 102 + 23771897 UGGGAGCUGGAACGGGUCACUCCCCCCGUAGAACGACCCUGCAUGCUUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCA .(((((.....(((((........))))).....((((.((.((((........))))))...))))((((((((............)))))))).))))). ( -33.10) >DroSec_CAF1 29063 102 + 1 UGGGAGCGGGAAGGGGUCACUCCUCCCGUGGAACGACCCUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCA .((((((((((.((((...))))))))))(((..((((.((.(((.(((......)))))))))))).(((((((............)))))))))))))). ( -40.40) >DroSim_CAF1 17973 102 + 1 UGGGAGCGGGAAGGGGUCACUCCUCCCGUGGAACGACCCUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCA .((((((((((.((((...))))))))))(((..((((.((.(((.(((......)))))))))))).(((((((............)))))))))))))). ( -40.40) >DroYak_CAF1 28324 86 + 1 UGGCUGCUAUGGCGGCU------------A-UAAGUAUGUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCCUUCAUGGCU---CCCA (((((((....))))))------------)-...((((((((........)))))))).....((..((((((((............))))))))---.)). ( -29.20) >consensus UGGGAGCGGGAACGGGUCACUCCUCCCGUAGAACGACCCUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCA .((((((((((.(((....))).)))))......((((.((.((((........))))))...))))((((((((............)))))))).))))). (-22.21 = -26.02 + 3.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:02 2006