Locus 1201

Sequence ID 3L_DroMel_CAF1
Location 3,407,757 – 3,407,848
Length 91
Max. P 0.612413
window1890

overview

Window 0

Location 3,407,757 – 3,407,848
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 90.66
Mean single sequence MFE -23.16
Consensus MFE -16.96
Energy contribution -17.20
Covariance contribution 0.24
Combinations/Pair 1.21
Mean z-score -1.83
Structure conservation index 0.73
SVM decision value 0.16
SVM RNA-class probability 0.612413
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3407757 91 - 23771897
UCUUGACUUUUUGUUCUUCUCUUGAGAGCUAAAAGUCACCCAAAGGUUAAGUGACCAGUGCUCAUCAGUUGGAAAGGCAUUAAAAGUCAUU
...(((((((((((..((((.((((((((.....(((((...........)))))....)))).))))..))))..)))..)))))))).. ( -26.90)
>DroSec_CAF1 22793 91 - 1
UCUUGACUUUUUGUUCUUCUCUUGAGUGCUAAAAGUCACCCAAAGGUUAAGUGGCCAGUGCUCAUCAGUUGGAAAGAUAUUAAAAGUCAUU
...((((((((...((((..(.((((..((....(((((...........))))).))..))))......)..))))....)))))))).. ( -23.90)
>DroSim_CAF1 11596 91 - 1
UCUUGACUUUUUGUUCUUCUCUUGAGUGCUAAAAGUCACCCAAAGGUUAAGUGGCCAGUGCUCAUCAGUUGGAAAGACAUUAAAAGUCAUU
...(((((((((((..((((((((((..((....(((((...........))))).))..))))..))..))))..)))..)))))))).. ( -25.20)
>DroEre_CAF1 23297 90 - 1
UCUUGACUU-UUGUUCUUCUUUCGAGUGCUAAAAGUCACCCAAAGGUUAAGUGGCCAGUGCUUAGCAGUAGAAAGGACAUUUAAAGGAAUU
......(((-(((...(((((((.(.(((((..((.(((.....((((....)))).)))))))))).).)))))))....)))))).... ( -20.40)
>DroYak_CAF1 21931 91 - 1
UCUUGACUUUUUGUUCCUCUUUCGAGUGCUAAAAGUCACCCGAAGGUUAAGUGGCCAGUGCUCAGCAGUAGAAAGGACAUUAAAAGCAAUU
..(((.((((((((((.(((...(((..((....(((((.(....)....))))).))..)))......)))..)))))..)))))))).. ( -19.40)
>consensus
UCUUGACUUUUUGUUCUUCUCUUGAGUGCUAAAAGUCACCCAAAGGUUAAGUGGCCAGUGCUCAUCAGUUGGAAAGACAUUAAAAGUCAUU
...((((((((.((((((.(((((((..((....(((((...........))))).))..))))......))))))).)).)))))))).. (-16.96 = -17.20 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:01 2006