Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,384,099 – 3,384,197 |
Length | 98 |
Max. P | 0.528552 |
Location | 3,384,099 – 3,384,197 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 92.86 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -30.70 |
Energy contribution | -30.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.22 |
Structure conservation index | 0.99 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3384099 98 - 23771897 AA---------AAAAUGCUGAAA-AAAGAACAGAAUGUUGCUGCCGUCGCCGAUGUGUUGCUGCUGUUGCUGUUGCACAAACAUUGCGGGCGGCGGCAUCUCACCGAC ..---------............-........(((((((((((((..(((.(((((..(((.((....))....)))...))))))))))))))))))).))...... ( -30.70) >DroSec_CAF1 51608 96 - 1 -----------AAAAUGCUGAAA-AAAGAACAGAAUGUUGCUGCCGUCGCCGAUGUGUUGCUGCUGUUGCUGUUGCACAAACAUUGCGGGCGGCGGCAUCUCACCGAC -----------............-........(((((((((((((..(((.(((((..(((.((....))....)))...))))))))))))))))))).))...... ( -30.70) >DroSim_CAF1 49736 96 - 1 -----------AAAAUGCUGAAA-AAAGAACAGAAUGUUGCUGCCGUCGCCGAUGUGUUGCUGCUGUUGCUGUUGCACAAACAUUGCGGGCGGCGGCAUCUCACCGAC -----------............-........(((((((((((((..(((.(((((..(((.((....))....)))...))))))))))))))))))).))...... ( -30.70) >DroYak_CAF1 50596 108 - 1 AAAAAAGGAAAAAAAGGCCGAAAAAAAGAACAGAAUGUUGCUGCCGUCGCCGAUGUGUUGCUGCUGUUGCUGUUGCACAAACAUUGCGGGCGGCGGCAUCUCACCGAC ......((.......(..(........)..).(((((((((((((..(((.(((((..(((.((....))....)))...))))))))))))))))))).)).))... ( -32.20) >consensus ___________AAAAUGCUGAAA_AAAGAACAGAAUGUUGCUGCCGUCGCCGAUGUGUUGCUGCUGUUGCUGUUGCACAAACAUUGCGGGCGGCGGCAUCUCACCGAC ................................(((((((((((((..(((.(((((..(((.((....))....)))...))))))))))))))))))).))...... (-30.70 = -30.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:00 2006