Locus 120

Sequence ID 3L_DroMel_CAF1
Location 396,015 – 396,114
Length 99
Max. P 0.698705
window170

overview

Window 0

Location 396,015 – 396,114
Length 99
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 80.18
Mean single sequence MFE -23.52
Consensus MFE -12.92
Energy contribution -14.96
Covariance contribution 2.04
Combinations/Pair 1.05
Mean z-score -2.00
Structure conservation index 0.55
SVM decision value 0.35
SVM RNA-class probability 0.698705
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 396015 99 - 23771897
A------AACAUCCACCCAAAUGUUACUGAAUGAUUUUGACUGAAUCAAGAACUGGUCAAACUCAUUCGAAGUGCAUUUAAUUGCUUUCAGAAUUUGG--------------GCGAAAU
.------......(.(((((((......((((((.(((((((............))))))).))))))((((.(((......)))))))...))))))--------------).).... ( -28.20)
>DroSec_CAF1 42999 114 - 1
AAAAAAAAACAUCCAUCCAAAUGUGACUGAAUGAUAUUGACUGAAUCAAGAACUGGUCAAACUCAUUCGAAAUGUAUUUAAU-----UCAGAAAUAGGAAACAGCGAGGAAAGCGAAAU
...........(((.((....(((..((((((((..((((((............))))))..))))))(((.((....)).)-----))......))...)))..)))))......... ( -17.10)
>DroSim_CAF1 45717 113 - 1
A------AACAUCCACCCAAAUGUAACUGAAUGAUUUUGACUGAAUCAAGAACUGGUCAAACUCAUUCGAAGUGCAUUUAAUUGCUUUCAGAAAUAGGAAACAGCGAGGAAAGCGAAAU
.------...........(((((((..(((((((.(((((((............))))))).)))))))...)))))))..((((((((.......(....)......))))))))... ( -30.22)
>DroEre_CAF1 46398 96 - 1
A------AACAUCCACCCAAAAGUGACUGUAGGAUGUUGACUGAAUCAGGAGCUGGUCAAGC-CAUUCGAAAUGCAUUUAAUUGCUUUCAGCAAUAGG----------------GAAAU
.------........(((..(((((......(((((((((((............))))))..-)))))......))))).(((((.....))))).))----------------).... ( -21.00)
>DroYak_CAF1 47132 113 - 1
A------ACCAUCCACCCAAAUGUGACUGUAUGAUGUUGACUGUAUCACUAACUGGUCAAACUCAUUCGAAAUGCAUUUAAUUGCUUUCAGAAAUAGGAAAACGCGAGGAAAGCGAAAU
.------....(((..............(.((((..((((((((.......)).))))))..)))).)((((.(((......))))))).......)))...(((.......))).... ( -21.10)
>consensus
A______AACAUCCACCCAAAUGUGACUGAAUGAUGUUGACUGAAUCAAGAACUGGUCAAACUCAUUCGAAAUGCAUUUAAUUGCUUUCAGAAAUAGGAAA__GCGAGGAAAGCGAAAU
...........(((..............((((((..((((((............))))))..))))))((((.(((......))))))).......))).................... (-12.92 = -14.96 +   2.04) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:58 2006