Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 396,015 – 396,114 |
Length | 99 |
Max. P | 0.698705 |
Location | 396,015 – 396,114 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.18 |
Mean single sequence MFE | -23.52 |
Consensus MFE | -12.92 |
Energy contribution | -14.96 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.05 |
Mean z-score | -2.00 |
Structure conservation index | 0.55 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 396015 99 - 23771897 A------AACAUCCACCCAAAUGUUACUGAAUGAUUUUGACUGAAUCAAGAACUGGUCAAACUCAUUCGAAGUGCAUUUAAUUGCUUUCAGAAUUUGG--------------GCGAAAU .------......(.(((((((......((((((.(((((((............))))))).))))))((((.(((......)))))))...))))))--------------).).... ( -28.20) >DroSec_CAF1 42999 114 - 1 AAAAAAAAACAUCCAUCCAAAUGUGACUGAAUGAUAUUGACUGAAUCAAGAACUGGUCAAACUCAUUCGAAAUGUAUUUAAU-----UCAGAAAUAGGAAACAGCGAGGAAAGCGAAAU ...........(((.((....(((..((((((((..((((((............))))))..))))))(((.((....)).)-----))......))...)))..)))))......... ( -17.10) >DroSim_CAF1 45717 113 - 1 A------AACAUCCACCCAAAUGUAACUGAAUGAUUUUGACUGAAUCAAGAACUGGUCAAACUCAUUCGAAGUGCAUUUAAUUGCUUUCAGAAAUAGGAAACAGCGAGGAAAGCGAAAU .------...........(((((((..(((((((.(((((((............))))))).)))))))...)))))))..((((((((.......(....)......))))))))... ( -30.22) >DroEre_CAF1 46398 96 - 1 A------AACAUCCACCCAAAAGUGACUGUAGGAUGUUGACUGAAUCAGGAGCUGGUCAAGC-CAUUCGAAAUGCAUUUAAUUGCUUUCAGCAAUAGG----------------GAAAU .------........(((..(((((......(((((((((((............))))))..-)))))......))))).(((((.....))))).))----------------).... ( -21.00) >DroYak_CAF1 47132 113 - 1 A------ACCAUCCACCCAAAUGUGACUGUAUGAUGUUGACUGUAUCACUAACUGGUCAAACUCAUUCGAAAUGCAUUUAAUUGCUUUCAGAAAUAGGAAAACGCGAGGAAAGCGAAAU .------....(((..............(.((((..((((((((.......)).))))))..)))).)((((.(((......))))))).......)))...(((.......))).... ( -21.10) >consensus A______AACAUCCACCCAAAUGUGACUGAAUGAUGUUGACUGAAUCAAGAACUGGUCAAACUCAUUCGAAAUGCAUUUAAUUGCUUUCAGAAAUAGGAAA__GCGAGGAAAGCGAAAU ...........(((..............((((((..((((((............))))))..))))))((((.(((......))))))).......))).................... (-12.92 = -14.96 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:58 2006