Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 44,211 – 44,315 |
Length | 104 |
Max. P | 0.543750 |
Location | 44,211 – 44,315 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 92.00 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -27.55 |
Energy contribution | -28.00 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.80 |
Structure conservation index | 0.86 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 44211 104 + 23771897 --CCAUAAUAAACCAAUAAAAAAUUGCUGCUGCCGUCGCUGCAGCCACUUGCAGUUACAAUCAAGUGAUUUUUAUUAGAAG---CGAGUCUAGAGGGGCACUAUGGGGC --(((((.......((((((((...(((((.((....)).)))))((((((..........)))))).)))))))).....---...((((....))))..)))))... ( -26.20) >DroSec_CAF1 34334 107 + 1 CGCCAUAAUAAACCAAUAAAACGUUGCUGCUGCCGUAGCUGCAGACACUUGCAGUUACAAUUAAGUGAUUUUUAUUAGGAGCCGCGAGUCUA--GGGGCACUAUGGGGC (.(((((.....(((((((((.((..((......((((((((((....)))))))))).....))..))))))))).)).(((.(.......--).)))..))))).). ( -34.80) >DroSim_CAF1 36013 107 + 1 CGCCAUAAUAAACCAAUAAAACGUUGCUGCUGCCGUAGCUGCAGACACUUGCAGUUACAAUCAAGUGAUUUUUAUUAGGAGCCGCGAGUCUA--GGGGCACUAUGGGGC (.(((((.....(((((((((.((..((......((((((((((....)))))))))).....))..))))))))).)).(((.(.......--).)))..))))).). ( -34.80) >consensus CGCCAUAAUAAACCAAUAAAACGUUGCUGCUGCCGUAGCUGCAGACACUUGCAGUUACAAUCAAGUGAUUUUUAUUAGGAGCCGCGAGUCUA__GGGGCACUAUGGGGC ..(((((.....(((((((((.((..((......((((((((((....)))))))))).....))..))))))))).))........((((....))))..)))))... (-27.55 = -28.00 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:51 2006