Locus 1198

Sequence ID 3L_DroMel_CAF1
Location 3,383,311 – 3,383,405
Length 94
Max. P 0.959649
window1883

overview

Window 3

Location 3,383,311 – 3,383,405
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 94.95
Mean single sequence MFE -24.70
Consensus MFE -24.70
Energy contribution -24.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 1.00
SVM decision value 1.50
SVM RNA-class probability 0.959649
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3383311 94 + 23771897
UUCUUUUUGCGAAAACCCGGAUGACCCCGACAGCCCCGGUCGAUCCGGCGGGUUAUCACCACCAGCCCCUCGCACACACCACAUAUUGUACAUG
.......(((((....((((((((((...........)))).)))))).(((((.........))))).))))).................... ( -24.70)
>DroSec_CAF1 50792 89 + 1
UUCUUUUUGCGAAAACCCGGAUGACCCCGACAGCCCCGGUCGAUCCGGCGGGUUAUCACCACCAGCCCCUCGCACACACCACAUA-----CACA
.......(((((....((((((((((...........)))).)))))).(((((.........))))).)))))...........-----.... ( -24.70)
>DroSim_CAF1 48952 89 + 1
UUCUUUUUGCGAAAACCCGGAUGACCCCGACAGCCCCGGUCGAUCCGGCGGGUUAUCACCACCAGCCCCUCGCACACACCACAUA-----CAUA
.......(((((....((((((((((...........)))).)))))).(((((.........))))).)))))...........-----.... ( -24.70)
>consensus
UUCUUUUUGCGAAAACCCGGAUGACCCCGACAGCCCCGGUCGAUCCGGCGGGUUAUCACCACCAGCCCCUCGCACACACCACAUA_____CAUA
.......(((((....((((((((((...........)))).)))))).(((((.........))))).))))).................... (-24.70 = -24.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:55 2006