Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,382,328 – 3,382,448 |
Length | 120 |
Max. P | 0.869488 |
Location | 3,382,328 – 3,382,448 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.08 |
Mean single sequence MFE | -25.98 |
Consensus MFE | -21.66 |
Energy contribution | -21.86 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.83 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3382328 120 - 23771897 CCUUUCCCCGCAACCCUUUAGCUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGUCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA ........(((((((....(((...((.((....)).))....)))....))).((((((..(((((((.....))((((((((....)))))))).....))))).))))))))))... ( -23.60) >DroSec_CAF1 49827 120 - 1 CCUUUCCCCGCAACCCUUUAGCUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGGCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA ........((((.(((...(((...((.((....)).))....)))....))).((((((..(((((((.....))((((((((....)))))))).....))))).))))))))))... ( -25.30) >DroSim_CAF1 47981 120 - 1 CCUUUCCCCGCAACCCUUUAGCUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGGCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA ........((((.(((...(((...((.((....)).))....)))....))).((((((..(((((((.....))((((((((....)))))))).....))))).))))))))))... ( -25.30) >DroEre_CAF1 48841 119 - 1 C-CUGCCCCGCAACUCUUUGGGUUUUCCAUUCGUAUCGAUAUCGCUGUUCGGGCGAAUUGCUUUGAAGAUUCUCCCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA .-....((((........))))...........(((((.....((((.(((((.(((((........))))).)))((((((((....))))))))........)).))))....))))) ( -30.20) >DroYak_CAF1 48743 119 - 1 C-UCGCCCCGCAACCCUUCAGUUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGGCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCGCUUCUGCGAUA .-((((...((....((((((.....(.((((((.((((.........)))))))))).)..))))))........((((((((....))))))))............))....)))).. ( -25.50) >consensus CCUUUCCCCGCAACCCUUUAGCUUUUCCAUUCGUAUCGAUAUCGCUUUUCGGGCGAAUUGCUUUGAAGAUUCUCUCAUUCAUUGCACGCAAUGAAUCAACUUUCGAUCAGUUCUGCGAUA ........((((.................((((...((((.(((((.....)))))))))...))))((((.....((((((((....))))))))........)))).....))))... (-21.66 = -21.86 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:54 2006