Locus 1195

Sequence ID 3L_DroMel_CAF1
Location 3,381,458 – 3,381,561
Length 103
Max. P 0.739472
window1875

overview

Window 5

Location 3,381,458 – 3,381,561
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.49
Mean single sequence MFE -27.58
Consensus MFE -19.48
Energy contribution -20.00
Covariance contribution 0.52
Combinations/Pair 1.09
Mean z-score -1.83
Structure conservation index 0.71
SVM decision value 0.45
SVM RNA-class probability 0.739472
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3381458 103 - 23771897
AUCAUA----UUAAGUAU----------CUCUUUCGUAAGAUCCCAUUUCUUGCAGUGCACUUUGUUGUUUGCUCCUUGACUGCUG---GCGAGGUGCAACAGGUGCAAAAAUCACAACA
......----....((((----------((.....((((((.......))))))..(((((((((((....((.........)).)---))))))))))..))))))............. ( -26.20)
>DroSec_CAF1 48885 106 - 1
UUCAUAUAUUUUAAGCAU----------CUGCU-UGUAAGAUCCCAUUUCUUGCAGUGCACUCUGUUGUUUGCUCCUUGACUGCUG---GCGAGGUGCAACAGGUGCAAAAAUCACAACA
............((((..----------..)))-)((((((.......))))))..(((((.(((((((.....(((((.(....)---.))))).))))))))))))............ ( -31.30)
>DroSim_CAF1 47039 107 - 1
UUCAUUUAUCUUAAGCAU----------CUGCUUUGUAAGAUCCCAUUUCUUGCAGUGCACUCUGUUGUUUGCUCCUUGACUGCUG---GCGAGGUGCAACAGGUGCAAAAAUCACAACA
............((((..----------..))))(((((((.......))))))).(((((.(((((((.....(((((.(....)---.))))).))))))))))))............ ( -31.60)
>DroEre_CAF1 47807 120 - 1
UGCAAAUAUCUCAAAUAAUCCUGAUCAUCUCCUUUGUAAGCACCCAUUUCUCCCAGUGCACUGCGCUGUUUGCUCCUUGACUGCUGCUGCUGAGGUGCAACAGGUGCAAAAAUCACAACA
((((((....(((........)))........)))))).(((((.........((((((...)))))).((((.((((....((....)).)))).))))..)))))............. ( -27.10)
>DroYak_CAF1 47769 110 - 1
UUCAAAUAUCUUAAAUAA----------CUCCUUGGCCAGAUCCCAUUUCUUUCAGUGCACUGCGCUGUUUGCUCCUUGACUGCUGUUGCUGAGGUGCAACAGGUGCAAAAAUCACAACA
..................----------.....(((.......))).........(((...((((((..((((.((((....((....)).)))).))))..)))))).....))).... ( -21.70)
>consensus
UUCAUAUAUCUUAAGUAU__________CUCCUUUGUAAGAUCCCAUUUCUUGCAGUGCACUCUGUUGUUUGCUCCUUGACUGCUG___GCGAGGUGCAACAGGUGCAAAAAUCACAACA
...................................((((((.......))))))..(((((....(((((.((.(((((...........))))).))))))))))))............ (-19.48 = -20.00 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:48 2006