| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,379,285 – 3,379,380 |
| Length | 95 |
| Max. P | 0.986852 |
| Location | 3,379,285 – 3,379,380 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 98.60 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -33.52 |
| Energy contribution | -33.63 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.99 |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.986852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3379285 95 + 23771897 ACUCCAGACCCACCUCACCCAUACACACGAACAUGUGUGCCCCUCCGUAUGCGUGUGAGUUGGUGUGUGUGUUGGUGUGCGUUUAACGCAUUUUA ..........((((.(((.(((((..((..((((((((((......))))))))))..))..))))).)))..))))((((.....))))..... ( -32.20) >DroSec_CAF1 46384 95 + 1 ACUCCAGACCCACCUCACCCAUACACACGCACAUGUGUGCCCCUCCGUAUACGUGUGAGUUGGUGUGUGUGUUGGUGUGCGUUUAACGCAUUUUA ..........((((.(((.(((((..((.(((((((((((......))))))))))).))..))))).)))..))))((((.....))))..... ( -35.40) >DroSim_CAF1 44893 95 + 1 ACUCCAGACCCACCUCACCCAUACACACGCACAUGUGUGCCCCUCCGUAUGCGUGUGAGUUGGUGUGUGUGUUGGUGUGCGUUUAACGCAUUUUA ..........((((.(((.(((((..((.(((((((((((......))))))))))).))..))))).)))..))))((((.....))))..... ( -34.40) >consensus ACUCCAGACCCACCUCACCCAUACACACGCACAUGUGUGCCCCUCCGUAUGCGUGUGAGUUGGUGUGUGUGUUGGUGUGCGUUUAACGCAUUUUA ..........((((.(((.(((((..((.(((((((((((......))))))))))).))..))))).)))..))))((((.....))))..... (-33.52 = -33.63 + 0.11)
| Location | 3,379,285 – 3,379,380 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 98.60 |
| Mean single sequence MFE | -32.90 |
| Consensus MFE | -32.08 |
| Energy contribution | -32.30 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3379285 95 - 23771897 UAAAAUGCGUUAAACGCACACCAACACACACACCAACUCACACGCAUACGGAGGGGCACACAUGUUCGUGUGUAUGGGUGAGGUGGGUCUGGAGU .....((((.....))))........((.((.(((.(((((.(.((((((.(.(((((....))))).).)))))))))))).))))).)).... ( -31.10) >DroSec_CAF1 46384 95 - 1 UAAAAUGCGUUAAACGCACACCAACACACACACCAACUCACACGUAUACGGAGGGGCACACAUGUGCGUGUGUAUGGGUGAGGUGGGUCUGGAGU .....((((.....))))..(((((.(((.((((....((((((((((.(...(....).).))))))))))....))))..))).)).)))... ( -32.80) >DroSim_CAF1 44893 95 - 1 UAAAAUGCGUUAAACGCACACCAACACACACACCAACUCACACGCAUACGGAGGGGCACACAUGUGCGUGUGUAUGGGUGAGGUGGGUCUGGAGU .....((((.....))))..(((((.(((.((((....((((((((((.(...(....).).))))))))))....))))..))).)).)))... ( -34.80) >consensus UAAAAUGCGUUAAACGCACACCAACACACACACCAACUCACACGCAUACGGAGGGGCACACAUGUGCGUGUGUAUGGGUGAGGUGGGUCUGGAGU .....((((.....))))..(((((.(((.((((....((((((((((.(...(....).).))))))))))....))))..))).)).)))... (-32.08 = -32.30 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:38 2006