Locus 119

Sequence ID 3L_DroMel_CAF1
Location 385,613 – 385,707
Length 94
Max. P 0.532108
window169

overview

Window 9

Location 385,613 – 385,707
Length 94
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 80.85
Mean single sequence MFE -18.04
Consensus MFE -8.70
Energy contribution -9.28
Covariance contribution 0.58
Combinations/Pair 1.11
Mean z-score -2.35
Structure conservation index 0.48
SVM decision value -0.00
SVM RNA-class probability 0.532108
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 385613 94 + 23771897
------------AAAAAAAGGGGAAAA-UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGUACACA---
------------.......((((....-....))))........(((.((((((((...(((....)))...--.))))).....))).))).................--- ( -15.80)
>DroSec_CAF1 39615 92 + 1
------------A--AAAAGGGGAAAA-UCAACCUCAAUACAAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGUACACA---
------------.--....((((....-....))))........(((.((((((((...(((....)))...--.))))).....))).))).................--- ( -15.80)
>DroSim_CAF1 42349 92 + 1
------------A--AAAAGGGGAAAA-UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGUACACA---
------------.--....((((....-....))))........(((.((((((((...(((....)))...--.))))).....))).))).................--- ( -15.80)
>DroEre_CAF1 43053 104 + 1
AAAAAAAUACAAA--AAAGGGGGAAAA-UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGCACACA---
.............--...((((.....-....))))..............((((((...(((....)))...--.))))))..(((...............))).....--- ( -17.36)
>DroYak_CAF1 41742 92 + 1
------------A--AAAAGGGGAAAA-UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGCACACA---
------------.--....((((....-....))))..............((((((...(((....)))...--.))))))..(((...............))).....--- ( -16.86)
>DroAna_CAF1 36122 96 + 1
------------UAGAAAAGGAGAAACACAAGCCUCAGCUCGGAAUAAACAAA-UAAUGUCCGUCUGAGGCUUACUCCUGUACGCUGUGUACAUAUUAAG---UACCGAAUC
------------(((...(((((......(((((((((..((((.........-.....)))).))))))))).))))).....))).((((.......)---)))...... ( -26.64)
>consensus
____________A__AAAAGGGGAAAA_UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU__CUCGGCUACGCUGUCUACAUAUUAAAAAGUACACA___
...................((((.........))))........(((.((((((((...(((....)))......))))).....))).))).................... ( -8.70 =  -9.28 +   0.58) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:57 2006