Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 385,613 – 385,707 |
Length | 94 |
Max. P | 0.532108 |
Location | 385,613 – 385,707 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 80.85 |
Mean single sequence MFE | -18.04 |
Consensus MFE | -8.70 |
Energy contribution | -9.28 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.11 |
Mean z-score | -2.35 |
Structure conservation index | 0.48 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 385613 94 + 23771897 ------------AAAAAAAGGGGAAAA-UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGUACACA--- ------------.......((((....-....))))........(((.((((((((...(((....)))...--.))))).....))).))).................--- ( -15.80) >DroSec_CAF1 39615 92 + 1 ------------A--AAAAGGGGAAAA-UCAACCUCAAUACAAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGUACACA--- ------------.--....((((....-....))))........(((.((((((((...(((....)))...--.))))).....))).))).................--- ( -15.80) >DroSim_CAF1 42349 92 + 1 ------------A--AAAAGGGGAAAA-UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGUACACA--- ------------.--....((((....-....))))........(((.((((((((...(((....)))...--.))))).....))).))).................--- ( -15.80) >DroEre_CAF1 43053 104 + 1 AAAAAAAUACAAA--AAAGGGGGAAAA-UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGCACACA--- .............--...((((.....-....))))..............((((((...(((....)))...--.))))))..(((...............))).....--- ( -17.36) >DroYak_CAF1 41742 92 + 1 ------------A--AAAAGGGGAAAA-UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU--CUCGGCUACGCUGUCUACAUAUUAAAAAGCACACA--- ------------.--....((((....-....))))..............((((((...(((....)))...--.))))))..(((...............))).....--- ( -16.86) >DroAna_CAF1 36122 96 + 1 ------------UAGAAAAGGAGAAACACAAGCCUCAGCUCGGAAUAAACAAA-UAAUGUCCGUCUGAGGCUUACUCCUGUACGCUGUGUACAUAUUAAG---UACCGAAUC ------------(((...(((((......(((((((((..((((.........-.....)))).))))))))).))))).....))).((((.......)---)))...... ( -26.64) >consensus ____________A__AAAAGGGGAAAA_UCAACCUCAAUACGAAGUAAACAGCCGAAUAUUCAAAUGAAGAU__CUCGGCUACGCUGUCUACAUAUUAAAAAGUACACA___ ...................((((.........))))........(((.((((((((...(((....)))......))))).....))).))).................... ( -8.70 = -9.28 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:57 2006