Locus 1189

Sequence ID 3L_DroMel_CAF1
Location 3,378,321 – 3,378,440
Length 119
Max. P 0.832462
window1863

overview

Window 3

Location 3,378,321 – 3,378,440
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.67
Mean single sequence MFE -31.46
Consensus MFE -26.25
Energy contribution -27.05
Covariance contribution 0.80
Combinations/Pair 1.06
Mean z-score -1.66
Structure conservation index 0.83
SVM decision value 0.72
SVM RNA-class probability 0.832462
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3378321 119 - 23771897
CCACUGGGUUGUUGGUUGUUGUGUUUUUCUGCUCUUGCACUGCACAC-GCAUUCGUCCUCCAACAAAAAUCGAGGCAAAGUCGUAAACAGAACAACAACACCCCUUCAGCACCCACCGUA
.....(((.(((((.(((((.(((((..(.(((.((((..(((....-)))((((...............))))))))))).).))))).)))))))))).)))................ ( -29.26)
>DroSec_CAF1 45418 120 - 1
CCACUGGGUUGUUGGUUGUUGUGUUUUUCUGCUCUUGCACUGCACACGGCAUUCGUCCUCCAACAAAAAGCGAGGCAAAGUCGUAAACAGAACAACAACACCCCUUCAGCACCCACCAUC
....(((((.((((((((((((.......(((....)))(((...(((((.((.(.(((((........).))))).)))))))...))).)))))))).......)))))))))..... ( -33.01)
>DroSim_CAF1 43145 120 - 1
CCACUGGGUUGUUGGUUGUUGUGUUUUUCUGCUCUUGCACUGCACACGGCAUUCGUCCUCCAACAAAAAGCGAGGCAAAGUCGUAAACAGAACAACAACACCCCUUCAGCACCCACCGUC
....(((((.((((((((((((.......(((....)))(((...(((((.((.(.(((((........).))))).)))))))...))).)))))))).......)))))))))..... ( -33.01)
>DroEre_CAF1 44798 119 - 1
CCACUAGGUUGUUUGUUGUUGUGUU-UUCUGCUCUUGCACUGCACACGGCAUUCGUCCUCCAACAAAAAGCGAGGCAAAGUCGUAAACAGAACAACAACUCCCCUUCAGCGCCCACCGUC
.....(((..(.((((((((.((((-(..(((....)))......(((((.((.(.(((((........).))))).)))))))))))).)))))))).)..)))............... ( -27.90)
>DroYak_CAF1 44501 120 - 1
CCACUGCGUUGUGUGUUGUUGUGUUUUUCUGCUCUUGCACUGCACAUGGCAUUCGUCCUCCAACAAAAAGCGAGGCAAAGUCGUAAACAGAACAACAACACCCCUUCAGCGCCCACCGUC
.....((((((.((((((((((.......(((....)))(((...(((((.((.(.(((((........).))))).)))))))...))).)))))))))).....))))))........ ( -34.10)
>consensus
CCACUGGGUUGUUGGUUGUUGUGUUUUUCUGCUCUUGCACUGCACACGGCAUUCGUCCUCCAACAAAAAGCGAGGCAAAGUCGUAAACAGAACAACAACACCCCUUCAGCACCCACCGUC
....(((((.((((((((((((.......(((....)))(((...(((((.((.(.((((...........))))).)))))))...))).)))))))).......)))))))))..... (-26.25 = -27.05 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:37 2006