Locus 1188

Sequence ID 3L_DroMel_CAF1
Location 3,376,023 – 3,376,135
Length 112
Max. P 0.946496
window1862

overview

Window 2

Location 3,376,023 – 3,376,135
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.40
Mean single sequence MFE -36.70
Consensus MFE -33.54
Energy contribution -33.58
Covariance contribution 0.04
Combinations/Pair 1.08
Mean z-score -1.48
Structure conservation index 0.91
SVM decision value 1.36
SVM RNA-class probability 0.946496
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3376023 112 + 23771897
AACAUGCCUAGUUACCA--------GUGGGCGUCGAGUGCUGGAAGGGGAAGACAAGUGCCUCCAUCUCUGCUUCCCCGUAAUUAAUUAAAGAACCGUCAUUCGAUGUAGGCGUCGUUUU
(((((((((.....((.--------..))((((((((((.(((..(((((((.((((((....)).)).))))))))).(((....))).....))).)))))))))))))))).))).. ( -36.70)
>DroSec_CAF1 43142 112 + 1
AACAUGCCUAGUUACCA--------GUGGGCGUCGAGUGCUGGAAGGGGAAGACAAGUGCCUCCAUCUCUGUUUCCCCGUAAUUAAUUAAAGAACCGUCAUUCGACGUAGGCGUCGUUUU
(((((((((.....((.--------..))((((((((((.(((..(((((.((((((((....)).)).))))))))).(((....))).....))).)))))))))))))))).))).. ( -36.20)
>DroSim_CAF1 40875 112 + 1
AACAUGCCUAGUUACCA--------GUGGGCGUCGAGUGCUGGAAGGGGAAGACAAGUGCCUCCAUCUCUGCUUCCCCGUAAUUAAUUAAAGAACCGUCAUUCGAUGUAGGCGUCGUUUU
(((((((((.....((.--------..))((((((((((.(((..(((((((.((((((....)).)).))))))))).(((....))).....))).)))))))))))))))).))).. ( -36.70)
>DroEre_CAF1 42571 112 + 1
AACAUGCCUAGUUACCA--------GUGGGCGUCGAGUGGUGGAAGGGGCAGACAAGUGCCACCAUCGCUCUUUCCCCGUAAUUAAUUAAAGAACCGUCAUUCGAUGUAGGCGUCGUUUU
(((((((((((((((..--------..(((.(..(((((((((....((((......)))).)))))))))...)))))))))............((((....))))))))))).))).. ( -36.50)
>DroYak_CAF1 42132 120 + 1
AACAUGCCUAGUUACCAGCACCACAGUGGGCGUCGAGAGCUGGAAGGGGAGGACAAGUGCCUCCAUCUCUCUUUCGCCGUAAUUAAUUAAAGAACCGUCAUUCGAUGUAGGCGUCGUUUU
(((((((((((((((...(((....)))((((..(((((.((((.((.(........).)))))).)))))...)))))))))............((((....))))))))))).))).. ( -37.40)
>consensus
AACAUGCCUAGUUACCA________GUGGGCGUCGAGUGCUGGAAGGGGAAGACAAGUGCCUCCAUCUCUGUUUCCCCGUAAUUAAUUAAAGAACCGUCAUUCGAUGUAGGCGUCGUUUU
(((((((((.....(((.........)))((((((((((.(((..(((((((....(((....))).....))))))).(((....))).....))).)))))))))))))))).))).. (-33.54 = -33.58 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:36 2006