Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,371,387 – 3,371,501 |
Length | 114 |
Max. P | 0.994766 |
Location | 3,371,387 – 3,371,501 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.74 |
Mean single sequence MFE | -21.85 |
Consensus MFE | -19.48 |
Energy contribution | -19.24 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.13 |
Structure conservation index | 0.89 |
SVM decision value | 2.51 |
SVM RNA-class probability | 0.994766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3371387 114 + 23771897 UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUC------GCACUGUAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU ...((((((....((((((.......(((((.....))))).......))))))..........(((((((.(((..------.....))).)))((....)))))).))))))...... ( -20.34) >DroSec_CAF1 38509 114 + 1 UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCUCAACACUCGUACUC------GCAAUGCAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU ...(((((((((.......((((.(((((((((...((((...............................))))..------.))))))))).)))).....)))..))))))...... ( -24.58) >DroSim_CAF1 36206 114 + 1 UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUC------GCACUGCAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU ...(((((((((.......((((.((((((.((((((((((((....))))))....))))))........((....------))..)))))).)))).....)))..))))))...... ( -21.70) >DroEre_CAF1 37977 114 + 1 UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUC------GCACUGUAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU ...((((((....((((((.......(((((.....))))).......))))))..........(((((((.(((..------.....))).)))((....)))))).))))))...... ( -20.34) >DroYak_CAF1 37195 120 + 1 UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUCGCACUCGCACUGUAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU ...(((((((((.......((((.((((((.((...((((((((.....(((.((....)).)))....))))....))))...)).)))))).)))).....)))..))))))...... ( -22.30) >consensus UUUUAUUCAACAUUUACAUUCCCAUUUGCAUUGAUUGUGCAUGACUCUAUGUAAUUUUAAUCACAACACUCGUACUC______GCACUGUAAGAGGGAUUUCCUGUUAUGAAUAUUCCAU ...(((((((((.......((((.((((((..(((((((((((....))))))....)))))...((....))..............)))))).)))).....)))..))))))...... (-19.48 = -19.24 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:20 2006