Locus 1180

Sequence ID 3L_DroMel_CAF1
Location 3,370,261 – 3,370,381
Length 120
Max. P 0.685628
window1845

overview

Window 5

Location 3,370,261 – 3,370,381
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.25
Mean single sequence MFE -24.72
Consensus MFE -26.06
Energy contribution -26.06
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.08
Structure conservation index 1.05
SVM decision value 0.32
SVM RNA-class probability 0.685628
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3370261 120 - 23771897
UGAAAAAUACAUAUUUUCAUUUACAAGACCGGAAGAGCACUUCCUCCCUGAUGUGCUAGCUGUACCAUCAUCAAUCGCGGCACCCGCACCAAGAUACUCGUACUCGUAUAGUGGAAACCA
((((((.......))))))...........(((((....)))))....((((((((.....))).)))))......((((...)))).(((..((((........))))..)))...... ( -25.90)
>DroSec_CAF1 37405 114 - 1
UGAAAAAUACAUAUUUUCAUUUACAAGACCGGAAGAGCACUUCCUCCCUGAUGUGCUAGCUGUACCAUCAUCAAUCGCGGCACCCGCACCAAGAUACU------CGUAUAGUGGAAACCA
.............(((((((((((.((...(((((....)))))....((((((((.....))).)))))......((((...)))).........))------.))).))))))))... ( -24.50)
>DroSim_CAF1 35099 114 - 1
UGAAAAAUACAUAUUUUCAUUUACAAGACCGGAAGAGCACUUCCUCCCUGAUGUGCUAGCUGUACCAUCAUCAAUCGCGGCACCCGCACCAAGAUACU------CGUAUAGUGGAAACCA
.............(((((((((((.((...(((((....)))))....((((((((.....))).)))))......((((...)))).........))------.))).))))))))... ( -24.50)
>DroEre_CAF1 36860 114 - 1
UGAAAAAUACAUAUUUUCAUUUACAAGACCGGAAGAGCACUUCCUCCCUGAUGUGCUAGCUGUACCAUCAUCAAUCGCGGCACCCGCACCAAGAUACG------AGUAUAGUGGAAACCA
.............(((((((((((..((..(((((....)))))....((((((((.....))).)))))))....((((...))))...........------.))).))))))))... ( -24.20)
>DroYak_CAF1 36039 114 - 1
UGAAAAAUACAUAUUUUCAUUUACAAGACCGGAAGAGCACUUCCUCCCUGAUGUGCUAGCUGUACCAUCAUCAAUCGCGGCACCCGCACCAAGAUACU------CGUAUAGUGGAAACCA
.............(((((((((((.((...(((((....)))))....((((((((.....))).)))))......((((...)))).........))------.))).))))))))... ( -24.50)
>consensus
UGAAAAAUACAUAUUUUCAUUUACAAGACCGGAAGAGCACUUCCUCCCUGAUGUGCUAGCUGUACCAUCAUCAAUCGCGGCACCCGCACCAAGAUACU______CGUAUAGUGGAAACCA
((((((.......))))))...........(((((....)))))....((((((((.....))).)))))......((((...)))).(((..((((........))))..)))...... (-26.06 = -26.06 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:19 2006