Locus 118

Sequence ID 3L_DroMel_CAF1
Location 385,048 – 385,156
Length 108
Max. P 0.658198
window168

overview

Window 8

Location 385,048 – 385,156
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 91.79
Mean single sequence MFE -24.01
Consensus MFE -22.45
Energy contribution -22.84
Covariance contribution 0.39
Combinations/Pair 1.04
Mean z-score -1.06
Structure conservation index 0.93
SVM decision value 0.26
SVM RNA-class probability 0.658198
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 385048 108 + 23771897
CUGAUUUUACUUAAAGAGAUUAACUUCUAGGCUCUAUGGAAAUGCCCAUCAUAGUU-----------CGCU-UUUCCCGUGAAAUAUUCAUGAUCCCAACACGGCCAGCUCAGGGCCAUA
.(((((((.......))))))).......((((((((((......)))).......-----------.(((-....(((((..................)))))..)))..))))))... ( -21.47)
>DroSec_CAF1 39046 108 + 1
CUGAUUUUACUUAAAGAGAUUAACUUCUAGGCUCUAUGGAAAUGCCCAUCAUAGUU-----------CGCU-UUUCCCGUGAAAUAUUCAUGAUCCCAACACGGGCAGCUCAGGGCCAUA
.(((((((.......))))))).......((((((((((......)))).......-----------.(((-...((((((..................)))))).)))..))))))... ( -25.07)
>DroSim_CAF1 41780 108 + 1
CUGAUUUUACUUAAAGAGAUUAACUUCUAGGCUCUAUGGAAAUGCCCAUCAUAGUU-----------CGCU-UUUCCCGUGAAAUAUUCAUGAUCCCAACACGGGCAGCUCAGGGCCAUA
.(((((((.......))))))).......((((((((((......)))).......-----------.(((-...((((((..................)))))).)))..))))))... ( -25.07)
>DroEre_CAF1 42492 108 + 1
CUGAUUUUACUUAAAGAGAUUAACUUGUAGGCUCUAUGGAAAUGCCCAUCAUAGUU-----------UGCU-UUUCCCGUGAAAUAUUCAUGAUCCCAACACGGGCAGCUCAGGGCCAUA
.(((((((.......))))))).......((((((((((......)))).......-----------.(((-...((((((..................)))))).)))..))))))... ( -24.77)
>DroYak_CAF1 41143 108 + 1
CUGAUUUUACUUAAAGAGAUUAACUUCUAGGCUCUAUGGAAAUGCCCAUCAUAGUU-----------UGCU-UUUCCCGUGAAAUAUUCAUGAUCCCAACACGGGCAGCUCAGGGCCAUA
.(((((((.......))))))).......((((((((((......)))).......-----------.(((-...((((((..................)))))).)))..))))))... ( -24.77)
>DroAna_CAF1 35541 118 + 1
CGGAUUUUACUUAAAGAGAUUAACUUCUAGGCUCUAUGAAAACACUCAUCAUAGUUGAUUUCCUUUUCGCUUUUUCCCGUGAAAUAUUCAUGAACCCUACACGGGUAGCCAA--GCCAUA
.((.............(((......))).((((.((((((.......((((....)))).....((((((........))))))..)))))).((((.....))))))))..--.))... ( -22.90)
>consensus
CUGAUUUUACUUAAAGAGAUUAACUUCUAGGCUCUAUGGAAAUGCCCAUCAUAGUU___________CGCU_UUUCCCGUGAAAUAUUCAUGAUCCCAACACGGGCAGCUCAGGGCCAUA
.(((((((.......))))))).......((((((((((......))))...................(((....((((((..................)))))).)))..))))))... (-22.45 = -22.84 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:56 2006