Locus 1179

Sequence ID 3L_DroMel_CAF1
Location 3,369,335 – 3,369,455
Length 120
Max. P 0.731460
window1844

overview

Window 4

Location 3,369,335 – 3,369,455
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.17
Mean single sequence MFE -21.09
Consensus MFE -21.81
Energy contribution -21.09
Covariance contribution -0.72
Combinations/Pair 1.13
Mean z-score -1.18
Structure conservation index 1.03
SVM decision value 0.43
SVM RNA-class probability 0.731460
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3369335 120 + 23771897
GUUUUGCCAUUUUACGGUUUACACCUGUUUGAGUUCAAACUAUAAAUAUCGAAUGCCGUAAAUAUAUCCUCAUGGCCAUGGUUUCCAAUUUGAAUUUAUUUUCGCCCCACUCGCCAUUUU
.....(((((((((((((.......(((((((((....))).))))))......)))))))).........))))).(((((........((((......))))........)))))... ( -21.01)
>DroSec_CAF1 36512 120 + 1
GUUUUGCCAUUUUACGGUUUACACCUGUUUGAGUUCGAACUAUAAAUAUCGAAUGCCGUAAAUAUAUCCUCAUGGCCAUGGUUUCCAAUUUGAAUUUAUUUUCGCCCCACUCGCCAUUUU
.....(((((((((((((.......(((((((((....))).))))))......)))))))).........))))).(((((........((((......))))........)))))... ( -21.01)
>DroSim_CAF1 34178 120 + 1
GUUUUGCCAUUUUACGGUUUACACCUGUUUGAGUUCAAACUAUAAAUAUCGAAUGCCGUAAAUAUAUCCUCAUGGCCAUGGUUUCCAAUUUGAAUUUAUUUUCGCCCCACUCGCCAUUUU
.....(((((((((((((.......(((((((((....))).))))))......)))))))).........))))).(((((........((((......))))........)))))... ( -21.01)
>DroEre_CAF1 35237 120 + 1
GUUUUGCCAUUUUACGGUUUACACCUGUUUGAGUUCAAACUAUAAAUAUCGAAUGCCGUAAAUAUAUCCUCAUGGCCAUGGCUUCCAAUUCGAAUUUAUUUUCGCCCCACUCGCUAUUUU
.....(((((((((((((.......(((((((((....))).))))))......)))))))).........))))).(((((........((((......))))........)))))... ( -22.01)
>DroYak_CAF1 35157 120 + 1
GUUUUGCUAUUUUACGGUUUACACCUGUUUGAGUUCAAACUAUAAAUAUCGAAUGCCGUAAAUAUAUCCUCAUGGCCAUGGUUUCCAAUUCGAAUUUAUUUUCGCCCCACUCGCCAUUUU
.....(((((((((((((.......(((((((((....))).))))))......)))))))).........))))).(((((........((((......))))........)))))... ( -20.41)
>consensus
GUUUUGCCAUUUUACGGUUUACACCUGUUUGAGUUCAAACUAUAAAUAUCGAAUGCCGUAAAUAUAUCCUCAUGGCCAUGGUUUCCAAUUUGAAUUUAUUUUCGCCCCACUCGCCAUUUU
.....(((((((((((((.......(((((((((....))).))))))......)))))))).........))))).(((((........((((......))))........)))))... (-21.81 = -21.09 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:18 2006