Locus 1178

Sequence ID 3L_DroMel_CAF1
Location 3,368,802 – 3,368,915
Length 113
Max. P 0.714126
window1843

overview

Window 3

Location 3,368,802 – 3,368,915
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.89
Mean single sequence MFE -30.38
Consensus MFE -29.54
Energy contribution -29.74
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.16
Structure conservation index 0.97
SVM decision value 0.38
SVM RNA-class probability 0.714126
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3368802 113 + 23771897
UC-------UGGGAUGAGGGGCUGCUGCUUCUUAUGAUAAUAAAUAUUUAUGCUUUUUCUGGGCUCUGUCAGUUGGGGAGACCAAUUCAAAGACGGACAGCGAAAUAAAAAUCCCAUUUC
..-------(((((((((((((....)))))))...........(((((.((((...((((..((.((..((((((.....)))))))).)).)))).)))))))))...)))))).... ( -30.90)
>DroSec_CAF1 35984 113 + 1
UC-------UGGGAUGAGGGACUGUUGCUUCUUAUGAUAAUAAAUAUUUAUGCUUUUUCUGGGCUCUGUCAGUUGGGGAGACCAAUUCAAAGACGGACAGCGAAAUAAAAAUCCCAUUUC
..-------((((((.........(((((......................((((.....))))((((((((((((.....))))))....)))))).))))).......)))))).... ( -26.69)
>DroSim_CAF1 33649 113 + 1
UC-------UGGGAUGAGGGGCUGCUGCUUCUUAUGAUAAUAAAUAUUUAUGCUUUUUCUGGGCUCUGUCAGUUGGGGAGACCAAUUCAAAGACGGACAGCGAAAUAAAAAUCCCAUUUC
..-------(((((((((((((....)))))))...........(((((.((((...((((..((.((..((((((.....)))))))).)).)))).)))))))))...)))))).... ( -30.90)
>DroEre_CAF1 34704 113 + 1
UC-------UGGGAUGAGGGGCUGCUGCUUCUUAUGAUAAUAAAUAUUUAUGCUUUUUCUGGGCUCUGUCAGUUGGGGAGACCAAUUCAAAGACGGACAGCGAAAUAAAAAUCCCAUUUC
..-------(((((((((((((....)))))))...........(((((.((((...((((..((.((..((((((.....)))))))).)).)))).)))))))))...)))))).... ( -30.90)
>DroYak_CAF1 34613 120 + 1
UCUCGGAUUUGGGAUGAGGGGCUGCUGCUUCUUAUGAUAAUAAAUAUUUAUGCUUUUUCUGGGCUCUGUCAGUUGGGGAGACCAAUUCAAAGACGGACAGCGAAAUAAAAAUCCCAUUUC
.....((..(((((((((((((....)))))))...........(((((.((((...((((..((.((..((((((.....)))))))).)).)))).)))))))))...))))))..)) ( -32.50)
>consensus
UC_______UGGGAUGAGGGGCUGCUGCUUCUUAUGAUAAUAAAUAUUUAUGCUUUUUCUGGGCUCUGUCAGUUGGGGAGACCAAUUCAAAGACGGACAGCGAAAUAAAAAUCCCAUUUC
.........(((((((((((((....)))))))...........(((((.((((...((((..((.((..((((((.....)))))))).)).)))).)))))))))...)))))).... (-29.54 = -29.74 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:17 2006