Locus 1177

Sequence ID 3L_DroMel_CAF1
Location 3,368,103 – 3,368,206
Length 103
Max. P 0.766030
window1842

overview

Window 2

Location 3,368,103 – 3,368,206
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.76
Mean single sequence MFE -25.81
Consensus MFE -12.87
Energy contribution -13.63
Covariance contribution 0.76
Combinations/Pair 1.20
Mean z-score -1.95
Structure conservation index 0.50
SVM decision value 0.52
SVM RNA-class probability 0.766030
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3368103 103 - 23771897
GCU----AGUACAAUAAGAA-------------AACUUUUAGAAGCUUGCUCCCCUCAGUACCCAUAUACCUUUAUUCCGACUCUAUGUACAGGGUACUUGGGCAAGACAAAAGACAAAG
...----.............-------------..(((((.(...(((((((.....((((((((((......)))....((.....))...))))))).))))))).))))))...... ( -19.40)
>DroSec_CAF1 35429 103 - 1
GCU----AGUAUAGUAAGAA-------------AACUAUUAGAAGCUGGCUCCCCCAAGUACCCAUAUACCUUUAUUCUGACUCCAUUUACUGGGUACUUGGGCAAGACAAAAGACAAAG
(((----((((((((.....-------------.))))).....))))))...((((((((((((..........................))))))))))))................. ( -28.67)
>DroSim_CAF1 33094 103 - 1
GCU----AGUAUAGUAAGAA-------------AACUAUUAGAAACUGGCUCCCCCAAGUACCCAUAUACCUUUAUUCUGACUCCAUUUACAGGGUACUUGGGCAAGACAAAAGACAAAG
(((----((((((((.....-------------.))))).....))))))...(((((((((((............................)))))))))))................. ( -27.39)
>DroEre_CAF1 34154 108 - 1
GCUCAUUAUUGUAAUGAGUAGC----------UAACUAUUAGAAGUUUGGUCACCUAAGUACGGGCAUACCUUUUCUGAGAU-GCAUCUACAGGGUAUUUG-GCAAGACAAAAGACAAAG
((((((((...))))))))...----------............((((.(((..((((((((((.....))...(((((((.-...))).)))))))))))-)...)))...)))).... ( -25.70)
>DroYak_CAF1 34114 120 - 1
GCUCACUAAUAUAAUGAGAAGCGGGCUUAAGCCUACAAUUAGAAGCUUGCCCACCCAAGUACCCAUAUACCUUUUCCGUGAUUUCUUUUACAGGGUAUUCGGGCAAGACAAAAGACAAAG
.((((.........))))..(..(((....)))..)........((((((((((((..(((......))).......((((......)))).))))....))))))).)........... ( -27.90)
>consensus
GCU____AGUAUAAUAAGAA_____________AACUAUUAGAAGCUUGCUCCCCCAAGUACCCAUAUACCUUUAUUCUGACUCCAUUUACAGGGUACUUGGGCAAGACAAAAGACAAAG
.............................................((((....(((((((((((............................)))))))))))))))............. (-12.87 = -13.63 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:16 2006