Locus 1175

Sequence ID 3L_DroMel_CAF1
Location 3,366,465 – 3,366,582
Length 117
Max. P 0.857442
window1840

overview

Window 0

Location 3,366,465 – 3,366,582
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.21
Mean single sequence MFE -33.70
Consensus MFE -26.50
Energy contribution -27.42
Covariance contribution 0.92
Combinations/Pair 1.07
Mean z-score -2.00
Structure conservation index 0.79
SVM decision value 0.81
SVM RNA-class probability 0.857442
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3366465 117 - 23771897
AUAUAUAAGGCACACAAGUGCCGGACACCUGAGGAGCGGCAUAAUCCGGCAGCGGCAUUAAUUCAUGGAAAUUCCGUCAAAAGAAAUUUUAGCC-CCUCCAUUCAGUCCGU--UCCAUCG
........(((((....)))))((((...(((((((.(((.(((((((....))).))))....((((.....)))).((((....)))).)))-.))))..)))))))..--....... ( -34.30)
>DroSec_CAF1 33778 117 - 1
AUAUAUAAGGCACACAAGUGCCGGACACCUGAGGAGCGGCCUAAUCCGGCAGCGGCAUUAAUUCAUGGAAAUUCCGUCAAAAGAAAUUUUAGCC-CCUCCAUUCAGUCCGU--UCCAUCG
........(((((....)))))((((....((((.((.(((......))).))(((........((((.....)))).((((....)))).)))-))))......))))..--....... ( -35.70)
>DroSim_CAF1 31448 117 - 1
AUAUAUAAGGCACACAAGUACCGGACACCUGAGGAGCGGCCUAAUCCGGCAGCGGCAUUAAUUCAUGGAAAUUCCGUCAAAAGAAAUUUUAGCC-CCUCCAUUCAGUCCGU--UCCAUCG
........((.((....)).))((((....((((.((.(((......))).))(((........((((.....)))).((((....)))).)))-))))......))))..--....... ( -29.10)
>DroEre_CAF1 32489 116 - 1
AUAUAUAAGGCACACAAGUGCCGGACACCUGAGGAGCGGCAUAAUCCGGCAGCGGCAUUAAUUCAUGGAAAUUCCGUCAGAAGAAAUUUUAGCCCCCUCCAUUCA----GUCCUCCAUGG
........(((((....)))))(((...((((((((.(((.(((((((....))).)))).(((((((.....))))..))).........)))..))))..)))----)...))).... ( -33.60)
>DroYak_CAF1 32421 120 - 1
AUAUAUAAGGCACACAAGUGCCGGACACCUGAGGAGCGGCAUAAUCCGGCAGCGGCAUUAAUUCAUGGAAAUUCCGUCAAAAGAAAUUUUAGCCCCCUCCAUUCAGUUAGUCCACCAAAG
........(((((....)))))((((..((((((((.(((.(((((((....))).))))....((((.....)))).((((....)))).)))..))))..))))...))))....... ( -35.80)
>consensus
AUAUAUAAGGCACACAAGUGCCGGACACCUGAGGAGCGGCAUAAUCCGGCAGCGGCAUUAAUUCAUGGAAAUUCCGUCAAAAGAAAUUUUAGCC_CCUCCAUUCAGUCCGU__UCCAUCG
........(((((....)))))((((....((((.((.((........)).))(((........((((.....)))).((((....)))).))).))))......))))........... (-26.50 = -27.42 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:14 2006