Locus 1173

Sequence ID 3L_DroMel_CAF1
Location 3,365,040 – 3,365,154
Length 114
Max. P 0.874304
window1837

overview

Window 7

Location 3,365,040 – 3,365,154
Length 114
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 94.30
Mean single sequence MFE -46.93
Consensus MFE -42.69
Energy contribution -42.80
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.25
Structure conservation index 0.91
SVM decision value 0.88
SVM RNA-class probability 0.874304
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3365040 114 + 23771897
---UCCCCCUCGAAAUGGGUGGGUCCAGCCUCCUUUCGACCCCACCCCACUUCCCUUUUCCACAAUUUGGCCAUGCAUAAUGCAGUCGAAGGGGCGGCAAAUCGGGGGGAGGGGCCC
---..((((((.....(((((((((.((......)).)).)))))))..(((((..(((((.(..((((((..(((.....)))))))))...).)).)))..)))))))))))... ( -43.00)
>DroSec_CAF1 32344 117 + 1
CCAUCCACCUACCAAUGGGUGGGUCCAGCCCCCUUUCGACCCCACCCCACUUCCCUUUUCCCCAAUUUGGCCAUGCAUAAUGCAGUCGAAGGGGCGGCAAGUCGGGGGGAGGGGCCC
..(((((((((....)))))))))...((((((....)..(((.(((.((((.((....((((..((((((..(((.....))))))))))))).)).)))).)))))).))))).. ( -48.90)
>DroSim_CAF1 30023 117 + 1
CCAUCCACCUACCAAUGGGUGGGUCCAGCCCCCUUUCGACCCCACCCCACUUCCCUUUUCCCCAAUUUGGCCAUGCAUAAUGCAGUCGAAGGGGCGGCAAGUCGGGGGGAGGGGCCC
..(((((((((....)))))))))...((((((....)..(((.(((.((((.((....((((..((((((..(((.....))))))))))))).)).)))).)))))).))))).. ( -48.90)
>consensus
CCAUCCACCUACCAAUGGGUGGGUCCAGCCCCCUUUCGACCCCACCCCACUUCCCUUUUCCCCAAUUUGGCCAUGCAUAAUGCAGUCGAAGGGGCGGCAAGUCGGGGGGAGGGGCCC
................(((((((((.((......)).)).))))))).....(((((..((((.(((((.((.(((.....)))(((.....)))))))))).))))..)))))... (-42.69 = -42.80 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:11 2006