Locus 117

Sequence ID 3L_DroMel_CAF1
Location 384,110 – 384,207
Length 97
Max. P 0.586493
window167

overview

Window 7

Location 384,110 – 384,207
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 96.49
Mean single sequence MFE -21.02
Consensus MFE -19.02
Energy contribution -19.46
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.20
Structure conservation index 0.90
SVM decision value 0.11
SVM RNA-class probability 0.586493
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 384110 97 - 23771897
CAAACCCAAUUUGCCUUGCUCGUCACAUCGAGGGGCCAUAAAAUUUGUUAAUUCCCCGCUGUGGAGAAACAAAACCGAAACGAAAUCAGGCCAGAUC
........((((((((.((((.((.....)).)))).......((((((..((((.......)))).))))))..............))).))))). ( -17.30)
>DroSec_CAF1 38219 97 - 1
CAAACCCAAUUUGCCUUGCUCGUCACAUCGAGGGGCCAUAAAAUUUGUUAAUUCUCCGCUGCCGAGAAACAAAACCGAAACAAAUUCAGGCCAGAUC
..................((((......)))).((((......((((((...((((.......))))))))))...(((.....))).))))..... ( -18.80)
>DroSim_CAF1 40900 97 - 1
CAAACCCAAUUUGCCUUGCUCGUCACAUCGAGGGGCCAUAAAAUUUGUUAAUUCUCCGCUGCGGAGAAACAAAACCGAAACAAAUUCAGGCCAGAUC
..................((((......)))).((((......((((((...((((((...))))))))))))...(((.....))).))))..... ( -23.80)
>DroEre_CAF1 41623 96 - 1
CAAACCCAAUUUGCCUUGCUCGUCACAUCG-GGGGCCAUUAAAUUUGUUAAUUCUCCGCUGCGGAGAAACAAAACCGAAACUAAAUCAGGCCAGAUC
....(((.((.((.(......).)).)).)-))((((......((((((...((((((...))))))))))))...((.......)).))))..... ( -22.50)
>DroYak_CAF1 40195 97 - 1
CAAACCCAAUUUGCCUUGCUCGUCACAUCGAGGGGCCAUAAAAUUUGUUAAUUCUCCGCUGCGGAGAAACAAAACCGAAACUAAAUCAGGCCAGAUC
........((((((((.((((.((.....)).)))).......((((((...((((((...))))))))))))..............))).))))). ( -22.70)
>consensus
CAAACCCAAUUUGCCUUGCUCGUCACAUCGAGGGGCCAUAAAAUUUGUUAAUUCUCCGCUGCGGAGAAACAAAACCGAAACAAAAUCAGGCCAGAUC
........((((((((.((((.((.....)).)))).......((((((...((((((...))))))))))))..............))).))))). (-19.02 = -19.46 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:55 2006