Locus 1167

Sequence ID 3L_DroMel_CAF1
Location 3,361,364 – 3,361,484
Length 120
Max. P 0.634493
window1817

overview

Window 7

Location 3,361,364 – 3,361,484
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.67
Mean single sequence MFE -33.90
Consensus MFE -28.76
Energy contribution -29.44
Covariance contribution 0.68
Combinations/Pair 1.05
Mean z-score -1.34
Structure conservation index 0.85
SVM decision value 0.21
SVM RNA-class probability 0.634493
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3361364 120 + 23771897
UUAUAGAACUUUUACUGUACUUGUAAAAUGUGCACUGUAAGCGUCGACGAGGCGCGCUUCCGUUAAAUUCAAUUGAAAUAUAAUGGAGGGCGGUUUUGAAUUGCGCCGCCCGUCCGAUUU
((((((.((((((((.......)))))).))...))))))(((((.....)))))...(((((((..(((....)))...)))))))(((((((.(......).)))))))......... ( -36.60)
>DroSec_CAF1 28525 120 + 1
UUUUAGAACUUUUACUGUACUUGUAAAAUGUGCACUGUAAGCGUCGACGAGGCGCGCUUCCGUUAAAUUCAAUUGAAAUAUAAUGGUGGGCGGUUUUGAAUUGCGCCGCCCGUCCGAUUU
...........(((((((((.........)))))..))))(((((.....)))))....((((((..(((....)))...)))))).(((((((.(......).)))))))......... ( -31.70)
>DroSim_CAF1 26227 120 + 1
UUUUAGAACUUUUACUGUACUUGUAAAAUGUGCACUGUAAGCGUCGACGAGGCGCGCUUCCGUUAAAUUCAAUUGAAAUAUAAUGGAGGGCGGUUUUGAAUUGCGCCGCCCGUCCGAUUU
.....((...((((((((((.........)))))..)))))..))((((.(((((.(((((((((..(((....)))...)))))))))(((((.....)))))).))))))))...... ( -34.30)
>DroEre_CAF1 27331 118 + 1
UUAGAGAACUUUUACUGUAUUUUUAAAAAGUGCACUGUAAGCGUCGACGAGGC--GCUUCCGUCAAAUUCAAUUGAAAUAUAAUGGAUGGUGGUUUUGAAUUGCGCCGCCCGUCCGAUUU
...............((((((((.......((.((.(.(((((((.....)))--))))).)))).........)))))))).(((((((((((.(......).)))).))))))).... ( -28.59)
>DroYak_CAF1 27117 120 + 1
UUAUAGAACCUUUACUGUACUUGUGAAAAGUGCACUGUAAGCGUCGACAAGGCGCGCUUCCGUUAAAUUCAAUUGAAAUAUAAUGGAGGGCGGUUUUGAAUUGCGCCGCCCGUCGGAUUU
........((.(((((((((((.....)))))))..))))(((((.....)))))...(((((((..(((....)))...)))))))(((((((.(......).)))))))...)).... ( -38.30)
>consensus
UUAUAGAACUUUUACUGUACUUGUAAAAUGUGCACUGUAAGCGUCGACGAGGCGCGCUUCCGUUAAAUUCAAUUGAAAUAUAAUGGAGGGCGGUUUUGAAUUGCGCCGCCCGUCCGAUUU
.....((...((((((((((.........)))))..)))))..))((((.((((.((((((((((..(((....)))...)))))))).(((((.....)))))))))))))))...... (-28.76 = -29.44 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:52 2006