Locus 1166

Sequence ID 3L_DroMel_CAF1
Location 3,360,225 – 3,360,344
Length 119
Max. P 0.603311
window1816

overview

Window 6

Location 3,360,225 – 3,360,344
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.13
Mean single sequence MFE -26.37
Consensus MFE -18.46
Energy contribution -20.06
Covariance contribution 1.60
Combinations/Pair 1.12
Mean z-score -1.71
Structure conservation index 0.70
SVM decision value 0.14
SVM RNA-class probability 0.603311
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3360225 119 + 23771897
UAUGUACUCCCGCGACCACGAUUACCAAUCGAUA-GAAUAGUCGCAGUCAGCUGUUGCAACGAUAACUGAUUGCGGCAAAACAAAGAAAACGCAGAGAAAAAGUUAACGCAAUUAAACGU
......(((..(((....((((.....))))...-.....(((((((((((.(((((...))))).))))))))))).............))).)))....................... ( -30.10)
>DroSec_CAF1 27409 119 + 1
UAUGUACUCGCGCUAUCACGAUUAUUAAUCGAUA-GAAUAGUCUCAGUCAGCUGUUGCGACGAUAACUGACUGCGGCAAAACAAAGAAAACGCUGAGAAAAAGUUAACGCAAUUAAGCGU
......(((((((((((..(((.....)))))))-)....(((.(((((((.(((((...))))).))))))).))).............))).))).........((((......)))) ( -31.50)
>DroSim_CAF1 25098 119 + 1
UAUGUACUCGCGCUAUCACGAUUACUAAUCGAUA-GAAUAGUCUCAGUCAGCUGUUGCAACGAUAACUGACUGCGACAAAACAAAGAAAACGCGGAGAAAAAGUUAACGCAAUUAAGCGU
......(((.(((.....((((.....))))...-.....(((.(((((((.(((((...))))).))))))).)))..............)))))).........((((......)))) ( -32.20)
>DroEre_CAF1 26280 100 + 1
--------------------AUAACUAAUCGAUAGGAAUAGUCGCACUCAGCUGUUGCAACGAUAACUAACUGCGGCAAAACAAAGAAAACACGGAGAAAAAGUUAACGCAAUUAAGCGU
--------------------.(((((.((((...(.((((((........)))))).)..))))......((.((.................)).))....)))))((((......)))) ( -16.93)
>DroYak_CAF1 25962 120 + 1
UAUGUAUUUUCGCGCAGACGAUAACCAAUCGAUAAGAAUAGUGGCGCUCAGCUGAUGCAACGAUAACUGACUGCGGCAAAACAAAGAAAACACGGAGAAAAAGUUAACGCAAUUAGGCGU
..(((.(((((.(((((.((((.....)))).......((((..((....((....))..))...)))).)))))(.....)...))))).)))............((((......)))) ( -21.10)
>consensus
UAUGUACUCGCGCGAUCACGAUUACUAAUCGAUA_GAAUAGUCGCAGUCAGCUGUUGCAACGAUAACUGACUGCGGCAAAACAAAGAAAACGCGGAGAAAAAGUUAACGCAAUUAAGCGU
..................((((.....)))).........(((((((((((.(((((...))))).))))))))))).............................((((......)))) (-18.46 = -20.06 +   1.60) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:51 2006