Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,360,225 – 3,360,344 |
Length | 119 |
Max. P | 0.603311 |
Location | 3,360,225 – 3,360,344 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.13 |
Mean single sequence MFE | -26.37 |
Consensus MFE | -18.46 |
Energy contribution | -20.06 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.12 |
Mean z-score | -1.71 |
Structure conservation index | 0.70 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3360225 119 + 23771897 UAUGUACUCCCGCGACCACGAUUACCAAUCGAUA-GAAUAGUCGCAGUCAGCUGUUGCAACGAUAACUGAUUGCGGCAAAACAAAGAAAACGCAGAGAAAAAGUUAACGCAAUUAAACGU ......(((..(((....((((.....))))...-.....(((((((((((.(((((...))))).))))))))))).............))).)))....................... ( -30.10) >DroSec_CAF1 27409 119 + 1 UAUGUACUCGCGCUAUCACGAUUAUUAAUCGAUA-GAAUAGUCUCAGUCAGCUGUUGCGACGAUAACUGACUGCGGCAAAACAAAGAAAACGCUGAGAAAAAGUUAACGCAAUUAAGCGU ......(((((((((((..(((.....)))))))-)....(((.(((((((.(((((...))))).))))))).))).............))).))).........((((......)))) ( -31.50) >DroSim_CAF1 25098 119 + 1 UAUGUACUCGCGCUAUCACGAUUACUAAUCGAUA-GAAUAGUCUCAGUCAGCUGUUGCAACGAUAACUGACUGCGACAAAACAAAGAAAACGCGGAGAAAAAGUUAACGCAAUUAAGCGU ......(((.(((.....((((.....))))...-.....(((.(((((((.(((((...))))).))))))).)))..............)))))).........((((......)))) ( -32.20) >DroEre_CAF1 26280 100 + 1 --------------------AUAACUAAUCGAUAGGAAUAGUCGCACUCAGCUGUUGCAACGAUAACUAACUGCGGCAAAACAAAGAAAACACGGAGAAAAAGUUAACGCAAUUAAGCGU --------------------.(((((.((((...(.((((((........)))))).)..))))......((.((.................)).))....)))))((((......)))) ( -16.93) >DroYak_CAF1 25962 120 + 1 UAUGUAUUUUCGCGCAGACGAUAACCAAUCGAUAAGAAUAGUGGCGCUCAGCUGAUGCAACGAUAACUGACUGCGGCAAAACAAAGAAAACACGGAGAAAAAGUUAACGCAAUUAGGCGU ..(((.(((((.(((((.((((.....)))).......((((..((....((....))..))...)))).)))))(.....)...))))).)))............((((......)))) ( -21.10) >consensus UAUGUACUCGCGCGAUCACGAUUACUAAUCGAUA_GAAUAGUCGCAGUCAGCUGUUGCAACGAUAACUGACUGCGGCAAAACAAAGAAAACGCGGAGAAAAAGUUAACGCAAUUAAGCGU ..................((((.....)))).........(((((((((((.(((((...))))).))))))))))).............................((((......)))) (-18.46 = -20.06 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:51 2006