Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,358,019 – 3,358,219 |
Length | 200 |
Max. P | 0.962892 |
Location | 3,358,019 – 3,358,139 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -40.44 |
Consensus MFE | -31.08 |
Energy contribution | -31.92 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.10 |
Mean z-score | -1.68 |
Structure conservation index | 0.77 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3358019 120 - 23771897 UUCACGCAGGGAACUAAUUUAAGUGGCUCCAGAAGCACCAACCGCUGAUUGGUGGGGGAGAACCGCGUCAAGGAGGUUACAAUUCCAUCAAGGAAGCAACAAGUUUCACUGCCUGCACGC ..((.((((((((((.......((((((((.((.((.....(((((....)))))((.....)))).))..))).)))))..((((.....))))......)))))).)))).))..... ( -35.40) >DroSec_CAF1 25203 120 - 1 UUCAGGCAGGGAACGAAUUUAAGUGGCUCCAGAAGCACCAACCGCUGAUUGGUGGGGGAGAACCGCGUCAAGGAUGUCACAAUUCCAUCCAGGAAGCAACAAGUUUCACUGCCUCCACGC ...(((((((((((........((((((((.((.((.....(((((....)))))((.....)))).))..))).)))))..((((.....)))).......))))).))))))...... ( -40.60) >DroSim_CAF1 22892 120 - 1 UUCAGGCAGGGAACUAAUUUAAGUGGCUCCAGAAGCACCAACCGCUGAUUGGUGGGGGAGAACCGCGUCAAGGAUGUCACAAUUCCAUCCAGGAAGCAACAAGUUUCACUGCCUCCACGC ...((((((((((((.......((((((((.((.((.....(((((....)))))((.....)))).))..))).)))))..((((.....))))......)))))).))))))...... ( -41.30) >DroEre_CAF1 23764 120 - 1 UGCAGGCUGGGAGCUAAUUUAAGUGGCUCCACAAGGACCACUCGCUUAUUGGUGGGACAGAACCGCGUCAAGGAGGUUACAAUUCCAUCCAGGAAGCAACAAGUUUCACUGCCGGCACGC (((.(((..((((((......(((((.(((....)))))))).((((.(((((((((...((((.(......).))))....))))).)))).))))....))))))...))).)))... ( -43.80) >DroYak_CAF1 23752 120 - 1 UGCAGGCUGGAAACUAACUUAAGUGGCUCCACAAGCACCAACCGCUGAUUGGUGGGGCAGAACGGCGUCAAGGAGGUUACGAUUCCAUCCAGGAAGCAACAAGUUUCACUGCCGGCACGC (((.(((..((((((.......((.(((((((.(((.......))).....)))))))...)).((.((..(((((........)).)))..)).))....))))))...))).)))... ( -41.10) >consensus UUCAGGCAGGGAACUAAUUUAAGUGGCUCCAGAAGCACCAACCGCUGAUUGGUGGGGGAGAACCGCGUCAAGGAGGUUACAAUUCCAUCCAGGAAGCAACAAGUUUCACUGCCUGCACGC ....(((((((((((.......((((((((.....((((((.......))))))((......)).......))).)))))..((((.....))))......)))))).)))))....... (-31.08 = -31.92 + 0.84)
Location | 3,358,099 – 3,358,219 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.00 |
Mean single sequence MFE | -44.14 |
Consensus MFE | -34.02 |
Energy contribution | -35.98 |
Covariance contribution | 1.96 |
Combinations/Pair | 1.06 |
Mean z-score | -2.49 |
Structure conservation index | 0.77 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3358099 120 - 23771897 CAUCGUCCUUCAGAUCCUCCAGGGAAACCGGAGGUCGCUGAAGGAGCUCCUGGGUGACUGUAAUCACGCAUGAAAUCCUCUUCACGCAGGGAACUAAUUUAAGUGGCUCCAGAAGCACCA .....((((((((..(((((.((....)))))))...))))))))(((.((((((.(((........((.((((......)))).))((....))......))).)).)))).))).... ( -50.20) >DroSec_CAF1 25283 120 - 1 CAUCGUCCUUAAGAUCCUCCAGGGAAACCAGAGGUCGCUGGAGGAGCUCCUGGGUGACUGUAACCACGCAUGAAAUCGUCUUCAGGCAGGGAACGAAUUUAAGUGGCUCCAGAAGCACCA ..((.(((....((.((((..((....)).))))))...))).))(((.((((((.(((((..((..((.((((......)))).)).))..)).......))).)).)))).))).... ( -39.81) >DroSim_CAF1 22972 120 - 1 CAUCGUCCUUAAGAUCCUCCAGGGAAACCAGAGGUCGCUGGAGGAGCUCCUGGGUGACUGUAACCACGCAUGAAAUCCUCUUCAGGCAGGGAACUAAUUUAAGUGGCUCCAGAAGCACCA ..((.(((....((.((((..((....)).))))))...))).))(((.((((((.(((........((.((((......)))).))((....))......))).)).)))).))).... ( -40.50) >DroEre_CAF1 23844 120 - 1 CAUCGUCCUCCAGAUCCUCUAGGGCAACCAGAGGUCGCUGGAGUAGCUCCUGGGUGACUGUGAUCACGCAUGAAAUCCGCUGCAGGCUGGGAGCUAAUUUAAGUGGCUCCACAAGGACCA ....(((((((((..(((((.((....)))))))...))))).(((((((..(((((......))))(((((.....)).)))...)..)))))))......(((....)))..)))).. ( -51.20) >DroYak_CAF1 23832 120 - 1 CAUCGUCCUCCAGAUCCUCCAGGGAAACCAGAGGUCGCUGCAGCAGCUCCGGGGUGACUGUGACCACGCAUGAAAUUCUCUGCAGGCUGGAAACUAACUUAAGUGGCUCCACAAGCACCA .........((.((.((((..((....)).))))))((((...))))...))((((..((((.(((((((.((.....)))))((...(....)...))...))))...))))..)))). ( -39.00) >consensus CAUCGUCCUUCAGAUCCUCCAGGGAAACCAGAGGUCGCUGGAGGAGCUCCUGGGUGACUGUAACCACGCAUGAAAUCCUCUUCAGGCAGGGAACUAAUUUAAGUGGCUCCAGAAGCACCA .....((((((((..((((..((....)).))))...))))))))(((.((((((.(((........((.((((......)))).)).(....).......))).)).)))).))).... (-34.02 = -35.98 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:46 2006