Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,357,702 – 3,357,819 |
Length | 117 |
Max. P | 0.830290 |
Location | 3,357,702 – 3,357,819 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 90.43 |
Mean single sequence MFE | -37.36 |
Consensus MFE | -28.30 |
Energy contribution | -30.70 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.07 |
Mean z-score | -2.00 |
Structure conservation index | 0.76 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3357702 117 + 23771897 GGCGUCAGAAGAGUGCGGCUAUAUGUCUGCAGGCCGCGACUAUCGGACCACUAUCGAUAGGCGGAUGCAGCUGAAAAAGGUAGCUAGAAAUAGCUGAAAAUGCACUGCAAUCGGUUA .(.(((.((..(((((((((...((....)))))))).))).)).))))...((((((..((((.((((.((.....)).((((((....))))))....)))))))).)))))).. ( -38.80) >DroSec_CAF1 24886 117 + 1 GGCGUCAGAAGAGUGCGGCUAUAUGUCUGCAGGCCGCGACUAUCGGACACCUAUCGAUAGACUGAUGCUGCUGACGAAGGUAUCUAGAAAUAGCUGAAAAUGCACUACAAUCGGUUA ((((((((.....(((((((...((....))))))))).(((((((.......))))))).))))))))(((((...(((((((((....)))......)))).))....))))).. ( -35.70) >DroSim_CAF1 22575 117 + 1 GGCGUCAGAAGAGUGCGGCUAUAUGUCUGCAGGCCGCGACUAUCGGACACCUAUCGAUAGGCUGAUGCAGCUGACGAAGGUAGCUAGAAAUAGCUGGAAAUGCACAACAAUCGGUUA .(((((((.....(((((((...((....))))))))).(((((((.......))))))).)))))))(((((((....)((((((....))))))..............)))))). ( -41.40) >DroEre_CAF1 23451 116 + 1 GGCGUCAGAAGAGUGCGGCUAUAUGUCUGCAGGCCGCGACUAUCGGACAAGUAUCGAUAAGCUG-UGCAGCUAAAGAAAGUAGCUGGAAAUAGCUAGAAAUUCACUGCAAUCGGUUG ...(((.((..(((((((((...((....)))))))).))).)).)))....((((((.(((((-(.((((((.......))))))...)))))).(.....)......)))))).. ( -33.70) >DroYak_CAF1 23436 116 + 1 GGCGUCAGAAGAGUGCGGCUAUAUGUCUGCAGGCCGCGACUAUCGGACCACUAUCGAUAAGCGGAUGCAGCUAAAGAAAAUAGCUAGAAAUAGCUA-AAAUACACCGCAAUCGGUUA ..........((.(((((((.((.(.(((((..((((...((((((.......)))))).)))).)))))))).))....((((((....))))))-.......))))).))..... ( -37.20) >consensus GGCGUCAGAAGAGUGCGGCUAUAUGUCUGCAGGCCGCGACUAUCGGACAACUAUCGAUAGGCUGAUGCAGCUGAAGAAGGUAGCUAGAAAUAGCUGAAAAUGCACUGCAAUCGGUUA .(((((((.....(((((((...((....))))))))).(((((((.......))))))).)))))))............((((((....))))))..................... (-28.30 = -30.70 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:44 2006