Locus 1160

Sequence ID 3L_DroMel_CAF1
Location 3,356,218 – 3,356,338
Length 120
Max. P 0.979530
window1806

overview

Window 6

Location 3,356,218 – 3,356,338
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.06
Mean single sequence MFE -45.15
Consensus MFE -40.33
Energy contribution -40.72
Covariance contribution 0.39
Combinations/Pair 1.18
Mean z-score -2.08
Structure conservation index 0.89
SVM decision value 1.84
SVM RNA-class probability 0.979530
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3356218 120 - 23771897
GACAUUCCUCAGGUGGCCUGGGUAUUGCCGCCUAGUAUUUCGCCCAAGGCACUGGGCGGCGUCAUCGAGCUUGACUGGAUCUGCCGCAAGGAAUUGUCUUUCAACGCCACCCUGCACCUG
.........((((((.(..((((...((((((((((.....(((...)))))))))))))......(.((((((..((((...((....))....)))).)))).))))))).))))))) ( -48.60)
>DroSec_CAF1 23399 120 - 1
GACAUUCCUCAGGUGGCCUGGGUAUUGCCGCCUAGUAUUUCGCCCAAAGCACUGGGCGGCGUCAUCGAGCUUGACUGGAUCUGCCGCAAGGAAUUGUCUUUCAACGCCACUCUACACCUG
.........((((((....((((...((((((((((.(((......))).))))))))))......(.((((((..((((...((....))....)))).)))).)))))))..)))))) ( -44.20)
>DroSim_CAF1 21087 120 - 1
GACAUUCCUCAGGUGGCCUGGGUAUUGCCGCCUAGUAUUUCGCCCAAGGCACUGGGCGGCGUCAUCGAGCUUGACUGGAUCUGCCGCAAGGAAUUGUCUUUCAACGCCACUCUGCACCUG
.........((((((((((.(((..(((((((((((.....(((...))))))))))))))..))).)).((((..((((...((....))....)))).)))).))))).)))...... ( -47.00)
>DroEre_CAF1 21978 120 - 1
GAUAUUCCUCAAGUGGCCUGGGUAUUGCCGCCUAGUAUUUCGCCCAAGGCACUAGGCGGCGUCAUCGAGCUUGACUGGAUCUGCCGAAAGGAAUUGUCUUUCAACGCCACCCUCCACCUG
.........((.((((...((((...((((((((((.....(((...)))))))))))))......(.((((((..((((...((....))....)))).)))).))))))).)))).)) ( -45.40)
>DroYak_CAF1 21973 120 - 1
GACAUUCCUCAGGUGGCCUGGGUAUUGCCGCCUAGUAUUUCGCCCAAGGCACUCGGCGGCGUCAUCGAGCUUGACUGGAUCUGCCGCAAGGAAUUGUCUUUCAAUGCCACCCUACACCUG
.........((((((....((((...((((((.(((.....(((...)))))).))))))......(.((((((..((((...((....))....)))).)))).)))))))..)))))) ( -44.90)
>DroAna_CAF1 24119 120 - 1
GACAUUCCUCAAGUGGCCUGGGUGCUGCCCCCAAGCAUAUCCUCCAAAGCCCUAGGCGGCGUCAUCGAGUUGGACUGGAUAUGCCGCAAGGAGCUGUCCUUUAACGCCACUCUCCACCUG
...........((((((..(((((.(((......)))))))).....((((((..(((((((.(((.((.....)).)))))))))).))).)))..........))))))......... ( -40.80)
>consensus
GACAUUCCUCAGGUGGCCUGGGUAUUGCCGCCUAGUAUUUCGCCCAAGGCACUGGGCGGCGUCAUCGAGCUUGACUGGAUCUGCCGCAAGGAAUUGUCUUUCAACGCCACCCUACACCUG
...........((((((((.(((..(((((((((((.....((.....)))))))))))))..))).)).((((..((((...((....))....)))).)))).))))))......... (-40.33 = -40.72 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:41 2006