| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 383,817 – 383,917 |
| Length | 100 |
| Max. P | 0.942951 |
| Location | 383,817 – 383,917 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 95.40 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.76 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 383817 100 + 23771897 GGAAAUUACGUGAAAUGUUGUUAAAAAUAUUUUAACAGCUAAAGUUGGGACAUAAACGAGCUCGAGAAACGAAAUUUUUGAUUUGCCUGCCCAAGAAGGC (((((((.(((.....(((((((((.....)))))))))...((((.(........).))))......))).))))))).....((((........)))) ( -20.00) >DroSec_CAF1 37923 100 + 1 GGAAAUUACGUGAAAUGUUGUUAAAAAUAUUUUAACAGCUAAAGUUGGGACAUAAACGAACUCGAGAAACGAAAUUUCUGAUUUGCCUGCCCAAGAAGGC (((((((.(((.....(((((((((.....)))))))))...((((.(........).))))......))).))))))).....((((........)))) ( -22.70) >DroSim_CAF1 40605 99 + 1 GGAAAUUACGUGAAAUGUUGUUCU-UUUAUUUUAACAGCUAAAGUUGGGACAUAAACGAACUCCAUAAACGAAAUUUCUGAUUUGCCUGCCCAAGAAGGC (((((((.(((...(((..((((.-(((((.....((((....))))....))))).))))..)))..))).))))))).....((((........)))) ( -24.50) >DroEre_CAF1 41310 100 + 1 GGAAAUUACGUGAAAUGUUGUUAAAAAUAUUUUAACAGCUAAAGUUGGGACAUAAACGAAGUCGAGAAACGAAAUUUCUGAUUUGCCUGCCCAAGAAGGC (((((((.(((.....(((((((((.....))))))))).........(((.........))).....))).))))))).....((((........)))) ( -21.20) >DroYak_CAF1 39879 100 + 1 GGAAAUUACGUGAAAUGUUGUUAAAAAUAUUUUAACAGCUAAAGUUGGGACAUAAACGAAGUCGAGAAACGAAAUUUCUGAUUUGCCUGACCAAGAAGGC (((((((.(((.....(((((((((.....))))))))).........(((.........))).....))).))))))).....((((........)))) ( -21.20) >consensus GGAAAUUACGUGAAAUGUUGUUAAAAAUAUUUUAACAGCUAAAGUUGGGACAUAAACGAACUCGAGAAACGAAAUUUCUGAUUUGCCUGCCCAAGAAGGC (((((((.(((.....(((((((((.....)))))))))...((((.(........).))))......))).))))))).....((((........)))) (-19.08 = -19.76 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:54 2006