Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,355,297 – 3,355,436 |
Length | 139 |
Max. P | 0.922509 |
Location | 3,355,297 – 3,355,396 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.05 |
Mean single sequence MFE | -45.80 |
Consensus MFE | -26.40 |
Energy contribution | -26.56 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.31 |
Mean z-score | -2.22 |
Structure conservation index | 0.58 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3355297 99 - 23771897 GGCGGUAGCAAUGGAGCUGGCGGGUUAGCUGCU---GCCCAGGCGGCGGCUGCGGGCGGUGGCAUGGGAGCCGGUG------GAGGAUCCGG---U---------GGCGGUAUGGGUGGA ..((.((((......)))).)).....((..((---((((.(((....)))..))))))..))......((((.((------(.....))).---)---------)))............ ( -42.40) >DroSec_CAF1 22478 99 - 1 GGCGGUAGCAAUGGAGCUGGUGGGUUAGCUGCU---GCCCAGGCGGCGGCUGCGGGCGGAGGCAUGGGAUCCGGUG------GAGGAUCCGG---U---------GGCGGUAUGGGUGGA ..(.(((.(......(((.((.....(((((((---((....))))))))))).)))...(.(((.((((((....------..)))))).)---)---------).)).))).)..... ( -43.90) >DroSim_CAF1 20166 99 - 1 GGCGGUAGCAAUGGCGCUGGUGGGUUAGCUGCU---GCCCAGGCGGCGGCUGCGGGCGGAGGCAUGGGAUCCGGUG------GAGGAUCCGG---U---------GGCGGUAUGGGUGGA ..(.(((.(.....((((.((.....(((((((---((....))))))))))).))))..(.(((.((((((....------..)))))).)---)---------).)).))).)..... ( -45.90) >DroEre_CAF1 21051 105 - 1 GGCGGUAGCAAUGGAGCUGGCGGCGUAGCUGCU---GCACAGGCAGCGGCUGCGGGCGGCGGCAUGGGAGCUGGUGGAGGUGGAGGAUCCGG---U---------GGCGGUAUGGGUGGA ..(.(((.(......((((.((.((((((((((---((....))))))))))).).)).))))......((((.((((.........)))).---)---------)))).))).)..... ( -46.20) >DroAna_CAF1 23177 114 - 1 GGUGGCAGUAACGGGGCUGGUGGAGCAGCUGGCGGAGCCCAGGCGGCAGCCGCUGGCGUUGGCCUGGGGCCGGGUG------UGGGCGGCAGUGGUGGCGGUUCGGGCAGUAUAGGUGGA ..(.((....((...((..((......))..))...((((..((.((.(((((((.((((.(((((....))))).------..)))).))))))).)).))..)))).))....)).). ( -50.60) >consensus GGCGGUAGCAAUGGAGCUGGUGGGUUAGCUGCU___GCCCAGGCGGCGGCUGCGGGCGGAGGCAUGGGAGCCGGUG______GAGGAUCCGG___U_________GGCGGUAUGGGUGGA ..((.((((......)))).)).....((((((....((((.((.((.((.....)).)).)).))))..((((..............)))).............))))))......... (-26.40 = -26.56 + 0.16)
Location | 3,355,323 – 3,355,436 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.68 |
Mean single sequence MFE | -51.53 |
Consensus MFE | -36.86 |
Energy contribution | -38.58 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.16 |
Mean z-score | -1.82 |
Structure conservation index | 0.72 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3355323 113 + 23771897 ----CACCGGCUCCCAUGCCACCGCCCGCAGCCGCCGCCUGGGC---AGCAGCUAACCCGCCAGCUCCAUUGCUACCGCCAUUGGCUGCUCCGCCGUAGACGGGGAAGCCAGGCGGUGGC ----....(((......)))..........((((((((((((.(---.((((((((..((..(((......)))..))...))))))))(((.(((....)))))).))))))))))))) ( -56.50) >DroSec_CAF1 22504 113 + 1 ----CACCGGAUCCCAUGCCUCCGCCCGCAGCCGCCGCCUGGGC---AGCAGCUAACCCACCAGCUCCAUUGCUACCGCCAUUGGCUGCUCCGCCGUAGACGGGGAAGCCAGGCGGUGGC ----...((((.........))))......((((((((((((.(---.((((((((......(((......))).......))))))))(((.(((....)))))).))))))))))))) ( -51.72) >DroSim_CAF1 20192 113 + 1 ----CACCGGAUCCCAUGCCUCCGCCCGCAGCCGCCGCCUGGGC---AGCAGCUAACCCACCAGCGCCAUUGCUACCGCCAUUGGCUGCUCCGCCGUAGACGGGGAAGCCAGGCGGUGGC ----...((((.........))))......((((((((((((.(---.((((((((......((((....)))).......))))))))(((.(((....)))))).))))))))))))) ( -51.12) >DroEre_CAF1 21079 117 + 1 CCUCCACCAGCUCCCAUGCCGCCGCCCGCAGCCGCUGCCUGUGC---AGCAGCUACGCCGCCAGCUCCAUUGCUACCGCCAUUGGCUGCGCCGCCGUAGACAGGGAAACCAGGUGGUGGC .................(((((((((((((((((((((....))---)))......(.((..(((......)))..)).)...)))))))............((....)).))))))))) ( -49.40) >DroAna_CAF1 23215 116 + 1 ----CACCCGGCCCCAGGCCAACGCCAGCGGCUGCCGCCUGGGCUCCGCCAGCUGCUCCACCAGCCCCGUUACUGCCACCAUUGGAAGCUCCACCGUAAACGGGAAAACCUGGUGGCGGG ----..(((((((((((((....(((...)))....)))))))....))).((((......)))).........(((((((.(((.....)))(((....))).......)))))))))) ( -48.90) >consensus ____CACCGGAUCCCAUGCCACCGCCCGCAGCCGCCGCCUGGGC___AGCAGCUAACCCACCAGCUCCAUUGCUACCGCCAUUGGCUGCUCCGCCGUAGACGGGGAAGCCAGGCGGUGGC ................(((........)))((((((((((((......((((((((......(((......))).......))))))))(((.(((....))))))..)))))))))))) (-36.86 = -38.58 + 1.72)
Location | 3,355,323 – 3,355,436 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.68 |
Mean single sequence MFE | -60.92 |
Consensus MFE | -45.18 |
Energy contribution | -45.30 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.27 |
Mean z-score | -1.65 |
Structure conservation index | 0.74 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3355323 113 - 23771897 GCCACCGCCUGGCUUCCCCGUCUACGGCGGAGCAGCCAAUGGCGGUAGCAAUGGAGCUGGCGGGUUAGCUGCU---GCCCAGGCGGCGGCUGCGGGCGGUGGCAUGGGAGCCGGUG---- (((((((((((.....((((((...(((......)))...(((..((....))..))))))))).((((((((---((....)))))))))))))))))))))((.(....).)).---- ( -63.10) >DroSec_CAF1 22504 113 - 1 GCCACCGCCUGGCUUCCCCGUCUACGGCGGAGCAGCCAAUGGCGGUAGCAAUGGAGCUGGUGGGUUAGCUGCU---GCCCAGGCGGCGGCUGCGGGCGGAGGCAUGGGAUCCGGUG---- (((.((((((((((((.(((....))).)))))..(((..(((..((....))..)))..)))..((((((((---((....))))))))))))))))).)))((.(....).)).---- ( -58.20) >DroSim_CAF1 20192 113 - 1 GCCACCGCCUGGCUUCCCCGUCUACGGCGGAGCAGCCAAUGGCGGUAGCAAUGGCGCUGGUGGGUUAGCUGCU---GCCCAGGCGGCGGCUGCGGGCGGAGGCAUGGGAUCCGGUG---- (((.((((((((((((.(((....))).)))))..(((..((((.((....)).))))..)))..((((((((---((....))))))))))))))))).)))((.(....).)).---- ( -61.90) >DroEre_CAF1 21079 117 - 1 GCCACCACCUGGUUUCCCUGUCUACGGCGGCGCAGCCAAUGGCGGUAGCAAUGGAGCUGGCGGCGUAGCUGCU---GCACAGGCAGCGGCUGCGGGCGGCGGCAUGGGAGCUGGUGGAGG .((.(((((.(((((((.((((..((.(..(((((((.(((.((.((((......)))).)).))).((((((---.....)))))))))))))).))..)))).)))))))))))).)) ( -64.90) >DroAna_CAF1 23215 116 - 1 CCCGCCACCAGGUUUUCCCGUUUACGGUGGAGCUUCCAAUGGUGGCAGUAACGGGGCUGGUGGAGCAGCUGGCGGAGCCCAGGCGGCAGCCGCUGGCGUUGGCCUGGGGCCGGGUG---- (((((((((((((((..(((....)))..))))).....))))))).........((..((......))..))((..(((((((.(..(((...)))..).))))))).)))))..---- ( -56.50) >consensus GCCACCGCCUGGCUUCCCCGUCUACGGCGGAGCAGCCAAUGGCGGUAGCAAUGGAGCUGGUGGGUUAGCUGCU___GCCCAGGCGGCGGCUGCGGGCGGAGGCAUGGGAGCCGGUG____ (((.((((((....((((((....))).)))((((((.....((.((((......)))).)).....((((((........)))))))))))))))))).)))................. (-45.18 = -45.30 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:36 2006