Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,341,497 – 3,341,606 |
Length | 109 |
Max. P | 0.833006 |
Location | 3,341,497 – 3,341,606 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 82.74 |
Mean single sequence MFE | -33.87 |
Consensus MFE | -26.99 |
Energy contribution | -27.47 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.19 |
Mean z-score | -2.08 |
Structure conservation index | 0.80 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3341497 109 + 23771897 ACAUUUUUC-UUUUCAGGCCUCUUUGGAUGAAGUGGAGGCCAUUCUUAAGCGUCAUCUGGACUUUGAGAAGAGCCUAAUGGCUCAGGACAAGAUCCUUAAAGGCUUCUCA .........-.(((((..((.....)).))))).(((((((.((((((((.(((.....)))))))))))(((((....)))))((((.....))))....))))))).. ( -35.60) >DroGri_CAF1 8926 109 + 1 AAUCCUUUG-CUUACAGUCCUCGCUGGAUGAGGUGGAGGCCAUACUUAAGCGUCAUCUGGACUUUGAGAAGAGCCUCAUGGCACAGGACAAGAUCCUCAAGGGCUUCUCG ..((((.((-(((((.((((.....))))...)))(((((..(.((((((.(((.....))))))))).)..)))))..)))).)))).(((.(((....)))))).... ( -33.40) >DroEre_CAF1 7664 109 + 1 UUACUUCUC-UUUUUAGUCCUCUUUGGAUGAAGUGGAGGCCAUUCUUAAGCGACACCUGGACUUUGAGAAGAGCCUAAUGGCUCAGGACAAGAUCCUUAAAGGCUUCUCA .((((((..-......((((.....))))))))))((((((.((((((((...(....)...))))))))(((((....)))))((((.....))))....))))))... ( -33.40) >DroWil_CAF1 7290 109 + 1 UUCU-UUUCUAUUAAAGUCCUCGCUUGAUGAGGUGGAAGCCAUUUUGAAGCGUCAUCUGGACUUUGAAAAGAGCCUGAUGGCUCAGGAUAAAAUUCUAAAAGGCUUCUCC ....-.............(((((.....))))).(((((((........(.((((((.((.((((....)))))).)))))).).(((......)))....))))))).. ( -31.70) >DroYak_CAF1 7722 109 + 1 UCGUUUUCC-CAUUUAGUCUUCUUUGGAUGAAGUGGAGGCCAUUCUUAAGCGUCACCUGGACUUUGAGAAGAGCCUAAUGGCUCAGGAUAAGAUCCUUAAAGGCUUUUCA ........(-(((((.((((.....)))).))))))(((((.((((((((.(((.....)))))))))))(((((....)))))(((((...)))))....))))).... ( -36.00) >DroMoj_CAF1 6607 109 + 1 GUUCGUUUG-CUUACAGUCCUCACUGGAUGAGGUGGAAGCCAUACUCAAGCGUCAUCUGGACUUUGAGAAGAGCCUAAUGGCACAGGACAAGAUACUGAAGGGCUUCUCU ........(-(((...((((.....)))).))))(((((((...((((((.(((.....)))))))))....(((....))).(((.........)))...))))))).. ( -33.10) >consensus UUACUUUUC_CUUACAGUCCUCUCUGGAUGAAGUGGAGGCCAUUCUUAAGCGUCAUCUGGACUUUGAGAAGAGCCUAAUGGCUCAGGACAAGAUCCUUAAAGGCUUCUCA ..................((((.......)))).(((((((.((((((((.(((.....)))))))))))(((((....)))))((((.....))))....))))))).. (-26.99 = -27.47 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:31 2006