Locus 1152

Sequence ID 3L_DroMel_CAF1
Location 3,337,324 – 3,337,424
Length 100
Max. P 0.500000
window1794

overview

Window 4

Location 3,337,324 – 3,337,424
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 74.97
Mean single sequence MFE -24.93
Consensus MFE -13.26
Energy contribution -12.87
Covariance contribution -0.39
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.53
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3337324 100 + 23771897
UUCUCGGUCUUAUCUGGACCAUCAUUCUGCGGUUUCAGAUUCAGGAAAUUGAAAUCGAUGUGGUAAGUUGUCCCUUCG--CA-AGUCACAUAGCAAAAG-UGCU
.....(((((.....)))))(((((....(((((((((.((....)).)))))))))..)))))..(((((.....(.--..-.)....))))).....-.... ( -23.30)
>DroPse_CAF1 4516 101 + 1
UUUUGGGUCUCAUUUGGACCAUCAUUUUGCGAUUUCAAAUACAGGAAAUUGAGAUUGAUGUUGUAAGUAGAGCCCCAA--AA-CGCCAUAUAUCGAAUGAUUAU
(((((((.((((((((.(.(((((.(((.(((((((........)))))))))).))))).).))))).))).)))))--))-..................... ( -27.80)
>DroGri_CAF1 4720 93 + 1
UUUUGGGUCUCAUCUGGACCAUCAUUUUGCGAUUUCAAAUUCAGGAAAUCGUCAUCGAUGUUGUAAGUUA-------AACUG-CUUCGAAUAAGAAA---CGAU
.....(((((.....)))))(((.((((((((((((........))))))))..((((.((.((......-------.)).)-).))))....))))---.))) ( -20.40)
>DroEre_CAF1 3518 91 + 1
UCCUCGGUCUGAUCUGGACCAUCAUUCUGCGGUUUCAGAUUCAGGAAAUUGAAAUCGAUGUGGUAAGUUGUCCCCCAG--CA-AGUCACAU----------CAU
((((..((((((....((((..........))))))))))..))))..........(((((((...((((.....)))--).-..))))))----------).. ( -26.00)
>DroYak_CAF1 3561 101 + 1
UUCUCGGUCUGAUCUGGACCAUCAUUCUGCGGUUUCAGAUUCAGGAAAUUGAAAUCGAUGUGGUAAGUUGUCGCCUAG--CAAAGUCACAUAACCAAAG-UGAU
.....(((((.....)))))((((((.(((((((((((.((....)).)))))))))((((((....((((......)--)))..))))))...)).))-)))) ( -25.90)
>DroPer_CAF1 2791 100 + 1
UUUUGGGUCUCAUUUGGACCAUCAUUUUGCGAUUUCAAAUACAGGAAAUUGAGAUUGAUGUUGUAAGUAGAGCCCCA---GU-CGCCAUAUAUCGAAUGAUUAU
..(((((.((((((((.(.(((((.(((.(((((((........)))))))))).))))).).))))).))).))))---)(-((........)))........ ( -26.20)
>consensus
UUCUCGGUCUCAUCUGGACCAUCAUUCUGCGAUUUCAAAUUCAGGAAAUUGAAAUCGAUGUGGUAAGUUGUCCCCCAG__CA_AGUCACAUAACAAA_G_UGAU
.....(((((.....)))))..((((...(((((((........))))))).....))))............................................ (-13.26 = -12.87 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:28 2006