Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,328,038 – 3,328,146 |
Length | 108 |
Max. P | 0.819525 |
Location | 3,328,038 – 3,328,146 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -23.58 |
Energy contribution | -23.42 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.25 |
Structure conservation index | 0.97 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3328038 108 - 23771897 GACUUGGUUUAAAAUAUAGUGUUAUAUAAGCGAUCUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUAUAA ((((.(((.....(((.((((((.....(((((.....((((......)))).....)))))((((....))))..)))))).))).....))))))).......... ( -23.70) >DroSec_CAF1 15957 108 - 1 GACUUGGUUUAAAAUAUAGUGUUAUAUAAGCGAUCUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUAUAA ((((.(((.....(((.((((((.....(((((.....((((......)))).....)))))((((....))))..)))))).))).....))))))).......... ( -23.70) >DroSim_CAF1 8719 108 - 1 GACUUGGUUUAAAAUAUAGUGUUAUAUAAGCGAACUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUAUAA ((((.(((.....(((.((((((.((((.((((((.....))).))).((.(((........))).))...)))).)))))).))).....))))))).......... ( -25.70) >DroEre_CAF1 16301 108 - 1 GACAUGGUUUAAAAUAUAAUGUUAUAUAAGCGAUCUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUCUAA (((.((((.....(((.((((((.....(((((.....((((......)))).....)))))((((....))))..)))))).))).....))))))).......... ( -23.70) >DroYak_CAF1 11267 108 - 1 GACUUGGUUUUAAAUAUAGUGUUAUAUAAGCGAGCUCAAGGUUACUCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUGUAA ((((.(((.....(((.((((((.((((((((.(((..((....)).))).)))).(((((.....))))))))).)))))).))).....))))))).......... ( -24.60) >consensus GACUUGGUUUAAAAUAUAGUGUUAUAUAAGCGAUCUCAAGGUUACGCGGCCUGCUUUUUGCUGCAUGCAAAUGUAAAACAUUCUGUAACCCACCAGUCACGACUAUAA (((.((((.....(((.((((((.....(((((.....((((......)))).....)))))((((....))))..)))))).))).....))))))).......... (-23.58 = -23.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:21 2006