Locus 1148

Sequence ID 3L_DroMel_CAF1
Location 3,326,949 – 3,327,048
Length 99
Max. P 0.575280
window1785

overview

Window 5

Location 3,326,949 – 3,327,048
Length 99
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 72.97
Mean single sequence MFE -14.95
Consensus MFE -1.94
Energy contribution -2.06
Covariance contribution 0.12
Combinations/Pair 1.52
Mean z-score -1.49
Structure conservation index 0.13
SVM decision value 0.08
SVM RNA-class probability 0.575280
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3326949 99 + 23771897
AUAAAACGAUCUCAUAGAAAUAUGUACGUUAGUUAAUAUCUUUAUUAAUGUUAUAUUGAAGGAAAUCCCAUUACUUGAUCAUAGUAAU-UGUUUUUUGGC
..((((((((.((.....((((((.((((((((..........))))))))))))))....)).)))..((((((.......))))))-.)))))..... ( -14.50)
>DroSec_CAF1 14911 83 + 1
-GAAAACGAUUUCAUAGUAAUACG--------UUAAUAUCUUUAUUAAUGUUAUGCUGGAAGAAAUCCCAUUACU-------AGUAAU-UGUUUUUAGGC
-((((((((((...((((((((((--------((((((....)))))))))......((.(....).))))))))-------)..)))-))))))).... ( -21.20)
>DroSim_CAF1 7332 91 + 1
AUAAAACGAUCUCAUAGUAAUACG--------UUAAUAUCUUUAUUAAUGUUAAACUGAAAGAAAUCCCAUUACUUGAUCAUAGUAAA-UGUUUUUAGGC
..((((((.(((..((((...(((--------((((((....)))))))))...))))..))).......(((((.......))))).-))))))..... ( -15.50)
>DroEre_CAF1 15190 90 + 1
UAGAAACAAUCUCAUAGUAAUGCA--------U--AUAGCUUCAUUAAUGUUCUACUUAAACAAAUCCCAUUACUUGCACAUAGUUAUGUGUUUUUACAG
................((((.(((--------(--((((((.((.(((((..................)))))..)).....))))))))))..)))).. ( -12.77)
>DroYak_CAF1 10158 83 + 1
AAGAGUCAAUCUCAAAGUAAUACG-----------------AUAUUAACGUUAUACUUAAACAAAUCCCAUAACUUGAUCAUAGUAAUGUGUUCUUAGAC
..(((.....))).(((((..(((-----------------.......)))..)))))...............((.((.((((....)))).))..)).. ( -10.80)
>consensus
AAAAAACGAUCUCAUAGUAAUACG________UUAAUAUCUUUAUUAAUGUUAUACUGAAAGAAAUCCCAUUACUUGAUCAUAGUAAU_UGUUUUUAGGC
.(((((((......(((((..(((........................)))..)))))...........((((((.......)))))).))))))).... ( -1.94 =  -2.06 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:20 2006