Locus 1147

Sequence ID 3L_DroMel_CAF1
Location 3,326,093 – 3,326,185
Length 92
Max. P 0.996181
window1784

overview

Window 4

Location 3,326,093 – 3,326,185
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 96.06
Mean single sequence MFE -26.28
Consensus MFE -23.28
Energy contribution -23.52
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.17
Structure conservation index 0.89
SVM decision value 2.66
SVM RNA-class probability 0.996181
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3326093 92 - 23771897
AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCCAAAAGGCAAAAUUCAUAUGCAGCCACAGUGCGGUUCGCAAC
.(((((..((..(((.((...((((((((..(((((...((((...)))).....))))))))).))))...)))))..))...)))))... ( -26.30)
>DroSec_CAF1 14104 91 - 1
AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCAAAAAGGCAA-AUUCAUAUGCAGCCACAGUGCGGUUCGCAAC
.(((((..((..(((.((...((((((((...((((...((((...)))).....)))))-))).))))...)))))..))...)))))... ( -25.00)
>DroSim_CAF1 6449 91 - 1
AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCCAAAAGGCAA-AUUCAUAUGCAGCCACAGUGCGGUUCGCAAC
.(((((..((..(((.((...((((((((...((((...((((...)))).....)))))-))).))))...)))))..))...)))))... ( -25.00)
>DroEre_CAF1 14314 91 - 1
AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGGCCUCGGCCCAUGAGGCAA-ACUCAUAUGCAGCCACAGUGCGGUUCGCAAC
.(((((..((..(((.((...((((......(((((.((((((....)))).)).)))))-....))))...)))))..))...)))))... ( -31.10)
>DroYak_CAF1 9303 91 - 1
AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCCAAGAAGCGA-ACUCAUAUGCAGCCACAGUGCGGUUCGCAAC
...(....)...(((.((((...........))))))).((((...))))......((((-((((((.((......))))).)))))))... ( -24.00)
>consensus
AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCCAAAAGGCAA_AUUCAUAUGCAGCCACAGUGCGGUUCGCAAC
.(((((..((..(((.((...((((......(((((...((((...)))).....))))).....))))...)))))..))...)))))... (-23.28 = -23.52 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:19 2006