Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,326,093 – 3,326,185 |
Length | 92 |
Max. P | 0.996181 |
Location | 3,326,093 – 3,326,185 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 96.06 |
Mean single sequence MFE | -26.28 |
Consensus MFE | -23.28 |
Energy contribution | -23.52 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.17 |
Structure conservation index | 0.89 |
SVM decision value | 2.66 |
SVM RNA-class probability | 0.996181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3326093 92 - 23771897 AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCCAAAAGGCAAAAUUCAUAUGCAGCCACAGUGCGGUUCGCAAC .(((((..((..(((.((...((((((((..(((((...((((...)))).....))))))))).))))...)))))..))...)))))... ( -26.30) >DroSec_CAF1 14104 91 - 1 AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCAAAAAGGCAA-AUUCAUAUGCAGCCACAGUGCGGUUCGCAAC .(((((..((..(((.((...((((((((...((((...((((...)))).....)))))-))).))))...)))))..))...)))))... ( -25.00) >DroSim_CAF1 6449 91 - 1 AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCCAAAAGGCAA-AUUCAUAUGCAGCCACAGUGCGGUUCGCAAC .(((((..((..(((.((...((((((((...((((...((((...)))).....)))))-))).))))...)))))..))...)))))... ( -25.00) >DroEre_CAF1 14314 91 - 1 AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGGCCUCGGCCCAUGAGGCAA-ACUCAUAUGCAGCCACAGUGCGGUUCGCAAC .(((((..((..(((.((...((((......(((((.((((((....)))).)).)))))-....))))...)))))..))...)))))... ( -31.10) >DroYak_CAF1 9303 91 - 1 AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCCAAGAAGCGA-ACUCAUAUGCAGCCACAGUGCGGUUCGCAAC ...(....)...(((.((((...........))))))).((((...))))......((((-((((((.((......))))).)))))))... ( -24.00) >consensus AGCGGAAACAAAGUGCGCAAAAUGUAAUUAAUUGCCACAGGCCCUCGGCCCAAAAGGCAA_AUUCAUAUGCAGCCACAGUGCGGUUCGCAAC .(((((..((..(((.((...((((......(((((...((((...)))).....))))).....))))...)))))..))...)))))... (-23.28 = -23.52 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:19 2006