Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,325,135 – 3,325,300 |
Length | 165 |
Max. P | 0.860784 |
Location | 3,325,135 – 3,325,226 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -27.26 |
Consensus MFE | -24.86 |
Energy contribution | -25.30 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.34 |
Structure conservation index | 0.91 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3325135 91 + 23771897 AAACCUGCUCUUGCCUUCCUUUCUGCCAGGUGAAAUUUCGCGGCA-AAGAGGUGGCUCUCUUUCACUCGGCUGGCAGCUGAAAAGGCCCCGA ......((.((((((..(((((.((((..((((....))))))))-.))))).)))..........(((((.....))))).)))))..... ( -27.70) >DroSec_CAF1 13146 91 + 1 AAACCUGCUCUUGCCUUCCUUUCUGCCAGGUGAAAUUUCGCGGCC-AAGAGGUGGCUCUCUUUCACUCGGCUGGCAGCAGAAAAGGCCCCGA ............(((((..((((((((((((((((....((.(((-....))).))....))))))....))))))).))).)))))..... ( -30.90) >DroSim_CAF1 5488 91 + 1 AAACCUGCUCUUGCCUUCCUUUCUGCCAGGUGAAAUUUCGCGGCC-AAGAGGUGGCUCUCUUUCACUCGGCUGGCAGCAGAAAAGGCCCCGA ............(((((..((((((((((((((((....((.(((-....))).))....))))))....))))))).))).)))))..... ( -30.90) >DroEre_CAF1 13326 91 + 1 AAACCUGCUCUUGCCUUCCUUUCUGCCGGGUGAAAU-UCGCGGCCAAAGAGGUGGCUCUCUUUCACUCCACUGCCAGUAAAAAAGACCCCAA ............(((..(((((..((((.(......-.).))))...))))).)))(((.(((.(((........))).))).)))...... ( -19.20) >DroYak_CAF1 8282 92 + 1 AAACCUGCUCUUGCCUUCUUUUCUGCCAGGUGAAAUUUCGCGGCCAAAGAGGUGGCUCUCUUUCACUCCACUGCCAGCAAAAGAGGCCCCAA ............((((.((((((((.(((((((((....((.(((.....))).))....))))))....))).))).)))))))))..... ( -27.60) >consensus AAACCUGCUCUUGCCUUCCUUUCUGCCAGGUGAAAUUUCGCGGCC_AAGAGGUGGCUCUCUUUCACUCGGCUGGCAGCAGAAAAGGCCCCGA ............(((((..((.(((((((((((((....((.(((.....))).))....))))))....))))))).))..)))))..... (-24.86 = -25.30 + 0.44)
Location | 3,325,135 – 3,325,226 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -26.14 |
Energy contribution | -26.58 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.60 |
Structure conservation index | 0.82 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819432 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3325135 91 - 23771897 UCGGGGCCUUUUCAGCUGCCAGCCGAGUGAAAGAGAGCCACCUCUU-UGCCGCGAAAUUUCACCUGGCAGAAAGGAAGGCAAGAGCAGGUUU ((...(((((((...(((((((....(((..((((((....)))))-)..)))((....))..)))))))...)))))))..))........ ( -31.40) >DroSec_CAF1 13146 91 - 1 UCGGGGCCUUUUCUGCUGCCAGCCGAGUGAAAGAGAGCCACCUCUU-GGCCGCGAAAUUUCACCUGGCAGAAAGGAAGGCAAGAGCAGGUUU ((...((((((..(.(((((((....((((((....((..((....-))..))....))))))))))))).)..))))))..))........ ( -33.70) >DroSim_CAF1 5488 91 - 1 UCGGGGCCUUUUCUGCUGCCAGCCGAGUGAAAGAGAGCCACCUCUU-GGCCGCGAAAUUUCACCUGGCAGAAAGGAAGGCAAGAGCAGGUUU ((...((((((..(.(((((((....((((((....((..((....-))..))....))))))))))))).)..))))))..))........ ( -33.70) >DroEre_CAF1 13326 91 - 1 UUGGGGUCUUUUUUACUGGCAGUGGAGUGAAAGAGAGCCACCUCUUUGGCCGCGA-AUUUCACCCGGCAGAAAGGAAGGCAAGAGCAGGUUU ...((.(((((((((((........))))))))))).))((((((((.(((....-.((((........))))....))).)))).)))).. ( -30.30) >DroYak_CAF1 8282 92 - 1 UUGGGGCCUCUUUUGCUGGCAGUGGAGUGAAAGAGAGCCACCUCUUUGGCCGCGAAAUUUCACCUGGCAGAAAAGAAGGCAAGAGCAGGUUU .....(((((((((.(((.(((((((((....(.(.((((......))))).)...)))))).))).)))))))).))))............ ( -30.30) >consensus UCGGGGCCUUUUCUGCUGCCAGCCGAGUGAAAGAGAGCCACCUCUU_GGCCGCGAAAUUUCACCUGGCAGAAAGGAAGGCAAGAGCAGGUUU ((...(((((((...(((((((....((((((....((..((.....))..))....)))))))))))))...)))))))..))........ (-26.14 = -26.58 + 0.44)
Location | 3,325,164 – 3,325,266 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 92.99 |
Mean single sequence MFE | -31.52 |
Consensus MFE | -23.36 |
Energy contribution | -23.48 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -2.20 |
Structure conservation index | 0.74 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3325164 102 - 23771897 CCGCAAACUCGAAAGCCAGGCCAAAACAAAGACCAAAUCUUCGGGGCCUUUUCAGCUGCCAGCCGAGUGAAAGAGAGCCACCUCUU-UGCCGCGAAAUUUCAC .(((..((((((((...(((((....(.((((.....)))).).))))))))).((.....)).)))).((((((......)))))-)...)))......... ( -26.60) >DroSec_CAF1 13175 102 - 1 CCGCAAACUCGAAAGCCUGGCCAAAACAAAGACCAAAUCUUCGGGGCCUUUUCUGCUGCCAGCCGAGUGAAAGAGAGCCACCUCUU-GGCCGCGAAAUUUCAC .(((.....(....)...((((((....((((.....)))).((((((((((..(((........)))..))))).))).))..))-)))))))......... ( -29.30) >DroSim_CAF1 5517 102 - 1 CCGCAAACUCGAAAGCCUGGCCAAAACAAAGACCAAAUCUUCGGGGCCUUUUCUGCUGCCAGCCGAGUGAAAGAGAGCCACCUCUU-GGCCGCGAAAUUUCAC .(((.....(....)...((((((....((((.....)))).((((((((((..(((........)))..))))).))).))..))-)))))))......... ( -29.30) >DroEre_CAF1 13355 102 - 1 CCGAAAACUCGAAAGCCAGGCCAAAACAAAGACCAAAUCUUUGGGGUCUUUUUUACUGGCAGUGGAGUGAAAGAGAGCCACCUCUUUGGCCGCGA-AUUUCAC ..........((((..(.(((((((.((((((.....))))))((.(((((((((((........))))))))))).)).....)))))))..).-.)))).. ( -35.30) >DroYak_CAF1 8311 103 - 1 CCGAAAACUCGAAAGCCAGGCCAAAACAAAGACCAAAUCUUUGGGGCCUCUUUUGCUGGCAGUGGAGUGAAAGAGAGCCACCUCUUUGGCCGCGAAAUUUCAC ..((((..(((.......(((((((.((((((.....)))))).(((((((((..((........))..)))))).))).....))))))).)))..)))).. ( -37.10) >consensus CCGCAAACUCGAAAGCCAGGCCAAAACAAAGACCAAAUCUUCGGGGCCUUUUCUGCUGCCAGCCGAGUGAAAGAGAGCCACCUCUU_GGCCGCGAAAUUUCAC .(((.....(....)...((((......((((.....)))).((((((((((..(((........)))..))))).))).)).....)))))))......... (-23.36 = -23.48 + 0.12)
Location | 3,325,194 – 3,325,300 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 92.75 |
Mean single sequence MFE | -35.62 |
Consensus MFE | -26.86 |
Energy contribution | -27.02 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.80 |
Structure conservation index | 0.75 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3325194 106 + 23771897 UUUCACUCGGCUGGCAGCUGAAAAGGCCCCGAAGAUUUGGUCUUUGUUUUGGCCUGGCUUUCGAGUUUGCGGACCUGGGCCAUAAACAAUUGCC----AGCAGGUUGUUC ...((..(.((((((((....(((((((..........)))))))(((((((((..(..((((......)))).)..))))).))))..)))))----))).)..))... ( -38.20) >DroSec_CAF1 13205 106 + 1 UUUCACUCGGCUGGCAGCAGAAAAGGCCCCGAAGAUUUGGUCUUUGUUUUGGCCAGGCUUUCGAGUUUGCGGACCUGGGCCAUAAACAAUUGUC----AGCAGGUUGUUC ...((..(.((((((((....(((((((..........)))))))((((((((((((..((((......))))))).))))).))))..)))))----))).)..))... ( -34.70) >DroSim_CAF1 5547 106 + 1 UUUCACUCGGCUGGCAGCAGAAAAGGCCCCGAAGAUUUGGUCUUUGUUUUGGCCAGGCUUUCGAGUUUGCGGACCUGGGCCAUAAACAAUUGCC----AGCAGGUUGUUC ...((..(.((((((((....(((((((..........)))))))((((((((((((..((((......))))))).))))).))))..)))))----))).)..))... ( -37.40) >DroEre_CAF1 13385 106 + 1 UUUCACUCCACUGCCAGUAAAAAAGACCCCAAAGAUUUGGUCUUUGUUUUGGCCUGGCUUUCGAGUUUUCGGACCUGGGCCAUAAACAAUUGCC----AGCAGGUUGUUC ..........((((..((((.(((((((..........)))))))(((((((((..(..((((......)))).)..))))).))))..)))).----.))))....... ( -33.30) >DroYak_CAF1 8342 110 + 1 UUUCACUCCACUGCCAGCAAAAGAGGCCCCAAAGAUUUGGUCUUUGUUUUGGCCUGGCUUUCGAGUUUUCGGACCUGGGCCAUAAACAAUUGCCAGCCAGCAGGUUGUUC ..........((((..((......(....).......((((..(((((((((((..(..((((......)))).)..))))).))))))..))))))..))))....... ( -34.50) >consensus UUUCACUCGGCUGGCAGCAGAAAAGGCCCCGAAGAUUUGGUCUUUGUUUUGGCCUGGCUUUCGAGUUUGCGGACCUGGGCCAUAAACAAUUGCC____AGCAGGUUGUUC ............((((((...(((((((..........)))))))((((((((((((..((((......)))).)))))))).))))..((((......)))))))))). (-26.86 = -27.02 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:16 2006