Locus 1143

Sequence ID 3L_DroMel_CAF1
Location 3,321,805 – 3,321,909
Length 104
Max. P 0.978992
window1776

overview

Window 6

Location 3,321,805 – 3,321,909
Length 104
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 78.30
Mean single sequence MFE -30.03
Consensus MFE -23.06
Energy contribution -22.30
Covariance contribution -0.76
Combinations/Pair 1.27
Mean z-score -2.08
Structure conservation index 0.77
SVM decision value 1.83
SVM RNA-class probability 0.978992
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3321805 104 + 23771897
---AUCUUAAUUAAUUGCAAAUCCUUACUACAAAUGAGACUUCCUAGAGCGUCUCAGUUGUGGAGGCUUGCCUGUUGUUCUGCUGUGAAUUAGCAUAACGAGGGUAC
---.............((((..(((..((((((.(((((((((...))).)))))).))))))))).))))((.(((((.(((((.....))))).))))).))... ( -31.30)
>DroSec_CAF1 9743 104 + 1
---AUCUAUAUUAAUGACAAAUCCUCACUGCAAAGGAGACUUCCUUGAGCGUCUCAGUUGUGGAGGCUUUCCUGUAGUUCUGCUGUGAAUUAGCAUAACGAGGGUAU
---.................((((((((((((..((((((((((...(((......)))..))))).)))))))))))..(((((.....)))))....)))))).. ( -31.40)
>DroYak_CAF1 4877 99 + 1
CAACUUUAAAUUGUUG--------CCACUUUAGAAGAGACUUCCGAAAGAGUCUUAGUUGUGGAGGCUUGCCUGUAGUUCUGCUGUGAAUUAGCAUAACGAGGGUGU
...............(--------((.((.(((..((((((..(....)))))))..))).)).)))..((((...(((.(((((.....))))).)))..)))).. ( -27.40)
>consensus
___AUCUAAAUUAAUG_CAAAUCCUCACUACAAAAGAGACUUCCUAGAGCGUCUCAGUUGUGGAGGCUUGCCUGUAGUUCUGCUGUGAAUUAGCAUAACGAGGGUAU
........................((.((((((..(((((..........)))))..)))))).))..(((((...(((.(((((.....))))).)))..))))). (-23.06 = -22.30 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:12 2006