| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,315,988 – 3,316,096 |
| Length | 108 |
| Max. P | 0.885294 |
| Location | 3,315,988 – 3,316,096 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.85 |
| Mean single sequence MFE | -40.52 |
| Consensus MFE | -22.64 |
| Energy contribution | -22.33 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3315988 108 + 23771897 AGUGACCAGG------AGAAGUCUGCAGUGGUGGCCACCACUAUUGCUCCGGACUGCGACAGGGGACAGCAGA------GAGCAGAGCUGCGGCAGCAGAAGUCCCAGCGCCUGGUGGAA ..(.((((((------...(((((((((((((((...))))))))))...)))))((.....(((((.((...------..))....((((....))))..))))).)).)))))).).. ( -47.20) >DroSim_CAF1 12501 108 + 1 AGUGACCAGG------AGAAGUCUGCAGUGGUGGCCACCACUAUUGCUCCGGACUGCGACAGGGGACAGCAAA------GAGCAGAUCUGGGGCAGCAGAAGUCCCAGCGUCUGGUGGAA ..(.((((((------.((..(((((((((((....))))))..(((((((((((((....(....)......------..)))).))))))))))))))..))......)))))).).. ( -46.20) >DroWil_CAF1 16554 120 + 1 AAUCAACAAGAUGGCGAUAAAUCUGUGGUGGUGGCCUCCACCAUUACUCCUGAUUGUGAUAGGCAACACCAGCAACAGCGAUCCUCUCGUCUGCAGCAAAAAUCUCAGAGAUUAAUUGAA ..............((((.(((((((((((((((...))))))))))..((((........(....)....((..((((((.....))).)))..)).......))))))))).)))).. ( -31.80) >DroYak_CAF1 11785 108 + 1 AGUGACCAGG------AGAAAUCCGCAGUGGUGGCCACCACAAUUGCGCCCGACUGCGACAGGGGACAGCAGA------GAGCCGAGCUGAGGCAGCAGAAGUCCCAACGCUUGAUGGAA .....(((((------(....)))(((((.(.(((((.......)).)))).))))).....(((((.((...------..))...((((...))))....))))).........))).. ( -36.90) >consensus AGUGACCAGG______AGAAAUCUGCAGUGGUGGCCACCACUAUUGCUCCGGACUGCGACAGGGGACAGCAGA______GAGCAGAGCUGCGGCAGCAGAAGUCCCAGCGCCUGAUGGAA ....((((((..............((((((((((...))))))))))......((((....(....)..............((.........)).))))...........)))))).... (-22.64 = -22.33 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:11 2006