Locus 1141

Sequence ID 3L_DroMel_CAF1
Location 3,315,155 – 3,315,269
Length 114
Max. P 0.805788
window1774

overview

Window 4

Location 3,315,155 – 3,315,269
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.47
Mean single sequence MFE -47.92
Consensus MFE -35.49
Energy contribution -36.43
Covariance contribution 0.94
Combinations/Pair 1.22
Mean z-score -1.87
Structure conservation index 0.74
SVM decision value 0.63
SVM RNA-class probability 0.805788
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3315155 114 - 23771897
CACCAUCGGUGACAUCUC-----CGAG-UGGCUGCUGCUGUUGCAGCCGGGACUCCACGAAAUCAUCUUUGGGCUGCUGAUCGUAGGAAGGCAUUGUGGUCACACUGGAGCCGAUGGUGG
((((((((((..((....-----..((-((.((.((((.(((((((((((....)).((((......)))))))))).))).))))..)).))))(((....)))))..)))))))))). ( -48.50)
>DroSim_CAF1 11668 114 - 1
CACCAUCGGUGACAUCUC-----CCAG-GGGCUGCUGCUGUUGCAGACGGGACUCCACGAAGUCAUCUUUGGGCUGCUGAUCGUAGGAAGGCAUUGUGGUCACACUGGAGCCGAUGGUGG
((((((((((..((...(-----((((-((((((((((....)))).)))((((......)))).)))))))).((((..((....)).))))..(((....)))))..)))))))))). ( -48.30)
>DroWil_CAF1 15654 120 - 1
GACCAUCGGUGGCAUCGCUACCACCAGAGGGCUGCUGCUGCUGCAGUUGUGACUCUACAAAGUCAUCCUUGGGCGCCUGAUCGUAUGAUGGCAUGGUCGUUACGCUCGAUCCAAUGGUCG
((((((.(((((........))))).((((((.(((((....))))).))((((......))))..))))(((((..(((((((........)))))))...)))))......)))))). ( -44.10)
>DroYak_CAF1 10988 114 - 1
CACCAUCGGUGACAUCGC-----CCAG-AGGCUGCUGCUGUUGCAGGCGAGACUCUACGAAGUCAUCCUUGGGCUGCUGAUCGUAGGAGGGCAUCGUGGUCACACUGGAACCGAUGGUGG
((((((((((..((((((-----((((-.(((....))).)))..)))))((((..((((.(((.((((((..(....)..)).)))).))).))))))))....))..)))))))))). ( -50.80)
>consensus
CACCAUCGGUGACAUCGC_____CCAG_GGGCUGCUGCUGUUGCAGACGGGACUCCACGAAGUCAUCCUUGGGCUGCUGAUCGUAGGAAGGCAUUGUGGUCACACUGGAGCCGAUGGUGG
((((((((((..((...............((((((.......))))))..(((..(((((.(((.((((((..(....)..)).)))).))).))))))))....))..)))))))))). (-35.49 = -36.43 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:10 2006