Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,314,964 – 3,315,084 |
Length | 120 |
Max. P | 0.760962 |
Location | 3,314,964 – 3,315,084 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.69 |
Mean single sequence MFE | -36.00 |
Consensus MFE | -25.97 |
Energy contribution | -26.72 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.23 |
Mean z-score | -1.76 |
Structure conservation index | 0.72 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760962 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3314964 120 + 23771897 GGAGCAUCCGGUUGCCAAGAUUCCCAAGGGAGAAACCCUGCUGCCUUUGGGACAUCCCCAUCCUGCAGUGGCUUCCGCCUACAGCAACAGCAAUAAUGGUCAAAUCCAGUCGUCGACAUA (((....((.(((((...((((((((((((((........)).))))))))).))).......(((.(((((....))).)).)))...)))))...)).....))).(((...)))... ( -35.40) >DroSim_CAF1 11477 120 + 1 GGAGCAUCCGGUUGCCAAGAUUCCCAAGGGAGAAACCCUGCUGCCUUUGGGACAUCCCCAUCCUGCAGUGGCUUCCGCCUACAGCAACAGCAACAAUGGUCAAAUCCAGUCGCAGACAUA (((....((.(((((...((((((((((((((........)).))))))))).))).......(((.(((((....))).)).)))...)))))...)).....))).(((...)))... ( -36.90) >DroWil_CAF1 15460 114 + 1 AGAUCGUCCAGUGGCCAAGAUACCCAAGGGCGAAACUCUUCUACCCUUGGGUCAUCCACAUCCGGCGGUUGCCUCUGCCUACAAUC------ACAAUGGCAACAUUCAGACCCAAAGCUA .....(((.((((((((.((((((((((((.(((....)))..))))))))).))).......(((((......))))).......------....))))..))))..)))......... ( -34.80) >DroYak_CAF1 10800 120 + 1 GGAGCAUCCGGUUGCUAAGAUACCCAAGGGCGAAACCCUGCUGCCCCUGGGACAUCCUCAUCCCGCAGUGGCGUCCGCCUACAGCAACAGCAACACUGGUCAAAUCCAAUCCCAGACAUA (((....(((((((((......((((.(((((.........))))).)))).............((.(((((....))).)).))...))))..))))).....)))............. ( -36.90) >consensus GGAGCAUCCGGUUGCCAAGAUACCCAAGGGAGAAACCCUGCUGCCCUUGGGACAUCCCCAUCCUGCAGUGGCUUCCGCCUACAGCAACAGCAACAAUGGUCAAAUCCAGUCCCAGACAUA (((....((((((((...((((((((((((.............))))))))).))).......(((.(((((....))).)).)))...)))))..))).....)))............. (-25.97 = -26.72 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:09 2006