| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,313,415 – 3,313,526 |
| Length | 111 |
| Max. P | 0.817414 |
| Location | 3,313,415 – 3,313,526 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.89 |
| Mean single sequence MFE | -38.37 |
| Consensus MFE | -31.01 |
| Energy contribution | -30.13 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3313415 111 - 23771897 AAAUUGGGGGAGCGAUCGCAUUCGCAAUCGCGAUCGCGAUCAGUGUCAAAGUCAACUGCAGCACUGGGAAUAGCAAUGCAUACACACUAUGGCGACAAUAGC---------UUCGAUAGC ........(((((((((((..((((....))))..)))))).((((((.(((....((((...(((....)))...)))).....))).)))).))....))---------)))...... ( -35.00) >DroSim_CAF1 9922 111 - 1 AAAUUGGGGGAGCGAUCGCAUUCGCAAUCGCGAUCGCGAUCAGUGUCAAAGUCAACUGCAGCACUGGGAAUAGCAAUGCAUACAUACUAUGGCGACGAUAGC---------UUCGAUAGC ........(((((((((((..((((....))))..)))))).((((((.(((....((((...(((....)))...)))).....))).)))).))....))---------)))...... ( -35.00) >DroYak_CAF1 9183 118 - 1 AAAUUGGGGGAGCGAUCGCAUUCGCAAUCGCGAUCGCGAUCAGUGUCAAAGUCAACUGCAGCACUGGGAAUAGCAAUGCAAA--GGCUAUGGCUAUGAUAGCUCCACCAGCUCCAAUAGC ...((((.(((((((((((..((((....))))..))))))..(((((.(((((...((.(((.((.......)).)))...--.))..))))).)))))))))).)))).......... ( -45.10) >consensus AAAUUGGGGGAGCGAUCGCAUUCGCAAUCGCGAUCGCGAUCAGUGUCAAAGUCAACUGCAGCACUGGGAAUAGCAAUGCAUACACACUAUGGCGACGAUAGC_________UUCGAUAGC ..((((((.....((((((..((((....))))..)))))).((((((.(((....((((...(((....)))...)))).....))).)))).))...............))))))... (-31.01 = -30.13 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:08 2006