Locus 1138

Sequence ID 3L_DroMel_CAF1
Location 3,312,860 – 3,312,959
Length 99
Max. P 0.730136
window1771

overview

Window 1

Location 3,312,860 – 3,312,959
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 92.93
Mean single sequence MFE -41.53
Consensus MFE -38.29
Energy contribution -38.30
Covariance contribution 0.01
Combinations/Pair 1.09
Mean z-score -1.81
Structure conservation index 0.92
SVM decision value 0.42
SVM RNA-class probability 0.730136
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3312860 99 - 23771897
CUGCUCCACUGGAGGAGGAGCAGCUCGAGAUCGGCGCCCCAAUGGGCUGACGGAUUCGCAUUUGUUGGUUUUGGGGGUGCUGGUCAGGCAAACUUGCGC
(((((((.(.....).))))))).....((((((((((((...((((..((((((....))))))..))))..))))))))))))..(((....))).. ( -48.20)
>DroSim_CAF1 9379 99 - 1
CUGCUCCACUGGAGGAGGAGCAGCUAGAGAUCGGCGCCCCAAUGGGCUGACGGAUUCGCAUUUUUUGGUUUUCGGGGUGCUGGUCAGGCAAACUUGCGC
(((((((.(.....).))))))).....((((((((((((...((((..(..(((....)))..)..))))..))))))))))))..(((....))).. ( -42.30)
>DroYak_CAF1 8719 98 - 1
CUGCUCCACUGGAGGAGGAGCAGCUCGAGUUUGGCGCCCCAAUGGGUUGAUGGAUUCGCAGUU-UCGGUUUUGGGGGUGCUGGUCAGGCAAAGUUGCGC
.((((((.(.....).))))))((.(((.((((.(((((....)))).....(((..(((.(.-.((....))..).)))..))).).)))).))).)) ( -34.10)
>consensus
CUGCUCCACUGGAGGAGGAGCAGCUCGAGAUCGGCGCCCCAAUGGGCUGACGGAUUCGCAUUU_UUGGUUUUGGGGGUGCUGGUCAGGCAAACUUGCGC
(((((((.(.....).))))))).....((((((((((((...(((((((.((((....)))).)))))))..))))))))))))..(((....))).. (-38.29 = -38.30 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:07 2006