Locus 1137

Sequence ID 3L_DroMel_CAF1
Location 3,312,219 – 3,312,330
Length 111
Max. P 0.873206
window1770

overview

Window 0

Location 3,312,219 – 3,312,330
Length 111
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 77.50
Mean single sequence MFE -39.53
Consensus MFE -27.63
Energy contribution -27.53
Covariance contribution -0.09
Combinations/Pair 1.26
Mean z-score -1.72
Structure conservation index 0.70
SVM decision value 0.88
SVM RNA-class probability 0.873206
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3312219 111 - 23771897
---------CGCCAGAUCCUCGAUGAUGCAGUCCAUCCAGUCUAGGAUCAACGUGCUUAACACCAUUGCUGCUUCCAGCAAGCGGAUUGAACGCGCCAGCGUUGACACGGUAAGUCCGAA
---------.(((.((((((.(((((((.....))))..))).))))))...(((.(((((.((.((((((....))))))..)).......((....)))))))))))))......... ( -35.70)
>DroSim_CAF1 8889 120 - 1
CGAGAACAUCGCCAGAUCUUCGACGAUGCAGUGCAUCCAGUCUGGCAUCAAUGUGCUUAGCAGCAUUGUUGCUGCGAACAAGCGAAGUAAACGCGCCAGUGUUGACACGGUAAGUGCGCA
..........(((((((.......(((((...)))))..))))))).....(((((...((((((....))))))..((..(((.......)))(((.(((....))))))..))))))) ( -39.10)
>DroYak_CAF1 8028 120 - 1
CAAGAACACCGCCAGAUCCUCGAAGAUCCAGUCCAUCCAAUCGGGGAUCAAUGUGCUCAACAGCAUUGCUGCUUCGAGUAGGCGACUUGAGCGCGCUUCUCUUGACACGGUAAGUGCGCA
((((.....((((.(((((((((.(((.......)))...)))))))))....(((((((((((...)))).)).))))))))).)))).((((((((..(.......)..)))))))). ( -43.80)
>consensus
C_AGAACA_CGCCAGAUCCUCGAAGAUGCAGUCCAUCCAGUCUGGGAUCAAUGUGCUUAACAGCAUUGCUGCUUCGAGCAAGCGAAUUGAACGCGCCAGUGUUGACACGGUAAGUGCGCA
..........(((.((((((.(((((((.....))))..))).))))))...(((.(((((((..(((((......)))))(((.......)))....)))))))))))))......... (-27.63 = -27.53 +  -0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:06 2006