Locus 1136

Sequence ID 3L_DroMel_CAF1
Location 3,311,220 – 3,311,333
Length 113
Max. P 0.990388
window1768 window1769

overview

Window 8

Location 3,311,220 – 3,311,333
Length 113
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 94.10
Mean single sequence MFE -27.53
Consensus MFE -24.92
Energy contribution -25.70
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.52
Structure conservation index 0.91
SVM decision value 1.18
SVM RNA-class probability 0.927244
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3311220 113 + 23771897
ACUGCAAUGAACCGCGUAGCCUGGGUCGAUUUUGAUACAGAAUAUAGUGUUUCAUACCCCGAUUGAAGAUAAGGCUAUAAAUAUCUAUAUCUCUUGAUCAAAACAUCGACCCA
...((.(((.....))).))..((((((((((((((..((((((((((((((.(((.((..(((...)))..)).)))))))).)))))).)))..))))))..)))))))). ( -29.80)
>DroSec_CAF1 7885 113 + 1
ACUGCAAUAAACCGCGUGGACUGGGUCGAUUUUGAUACUGAAUAUAGUGUUCCAUACCCCGAUUGAAUAUAAGGCUAUAAAUAUCUAUAUUUCUUGAUCAAAACAUCGACCCA
...((........)).......((((((((((((((...((((((((((((..(((.((..((.....))..)).))).)))).))))))))....))))))..)))))))). ( -28.00)
>DroSim_CAF1 7753 113 + 1
ACUGCAAUGAACCGCGUGGACUGGGUCGAUUUUGAUACAGAAUAUAGUGUUUCAUACACCGAUUAAAUAUAAGGCUAUAAAUAUCUACAUUUCUUGAUCAAAACAUCGACCCA
...((........)).......((((((((((((((..((((..((((((((.(((..((............)).)))))))).)))...))))..))))))..)))))))). ( -24.80)
>consensus
ACUGCAAUGAACCGCGUGGACUGGGUCGAUUUUGAUACAGAAUAUAGUGUUUCAUACCCCGAUUGAAUAUAAGGCUAUAAAUAUCUAUAUUUCUUGAUCAAAACAUCGACCCA
.((((..........))))...((((((((((((((...(((((((((((((.(((.((..((.....))..)).)))))))).)))))).))...))))))..)))))))). (-24.92 = -25.70 +   0.78)

alignment

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secondary structure

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dotplot

Postscript

Window 9

Location 3,311,220 – 3,311,333
Length 113
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 94.10
Mean single sequence MFE -32.63
Consensus MFE -31.53
Energy contribution -31.53
Covariance contribution 0.01
Combinations/Pair 1.08
Mean z-score -2.97
Structure conservation index 0.97
SVM decision value 2.21
SVM RNA-class probability 0.990388
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3311220 113 - 23771897
UGGGUCGAUGUUUUGAUCAAGAGAUAUAGAUAUUUAUAGCCUUAUCUUCAAUCGGGGUAUGAAACACUAUAUUCUGUAUCAAAAUCGACCCAGGCUACGCGGUUCAUUGCAGU
(((((((((..((((((..((((.(((((...((((((.(((.((.....)).))).))))))...)))))))))..)))))))))))))))......((((....))))... ( -34.50)
>DroSec_CAF1 7885 113 - 1
UGGGUCGAUGUUUUGAUCAAGAAAUAUAGAUAUUUAUAGCCUUAUAUUCAAUCGGGGUAUGGAACACUAUAUUCAGUAUCAAAAUCGACCCAGUCCACGCGGUUUAUUGCAGU
(((((((((..((((((...(((.(((((...((((((.(((.((.....)).))).))))))...))))))))...)))))))))))))))......((((....))))... ( -32.00)
>DroSim_CAF1 7753 113 - 1
UGGGUCGAUGUUUUGAUCAAGAAAUGUAGAUAUUUAUAGCCUUAUAUUUAAUCGGUGUAUGAAACACUAUAUUCUGUAUCAAAAUCGACCCAGUCCACGCGGUUCAUUGCAGU
(((((((((..((((((..((((.(((((...(((((((((............))).))))))...)))))))))..)))))))))))))))......((((....))))... ( -31.40)
>consensus
UGGGUCGAUGUUUUGAUCAAGAAAUAUAGAUAUUUAUAGCCUUAUAUUCAAUCGGGGUAUGAAACACUAUAUUCUGUAUCAAAAUCGACCCAGUCCACGCGGUUCAUUGCAGU
(((((((((..((((((..((((.(((((...((((((.(((.((.....)).))).))))))...)))))))))..)))))))))))))))......((((....))))... (-31.53 = -31.53 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:05 2006