Locus 1135

Sequence ID 3L_DroMel_CAF1
Location 3,309,671 – 3,309,776
Length 105
Max. P 0.569003
window1767

overview

Window 7

Location 3,309,671 – 3,309,776
Length 105
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 73.11
Mean single sequence MFE -24.54
Consensus MFE -16.66
Energy contribution -17.10
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -1.20
Structure conservation index 0.68
SVM decision value 0.07
SVM RNA-class probability 0.569003
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3309671 105 - 23771897
--------GUUCUGGUCUGGUCACACUAGGAGCACAACUUUUCCAGAGUUGCCAAGUGUGGUGGU-UAAGCCCUACUUUCUAAAUUUAAGCAUGA----AAGUAAAAGCCUUUAAUUA
--------.....(((....(((((((.((....((((((.....)))))))).))))))).((.-....)).(((((((.............))----)))))...)))........ ( -22.72)
>DroSec_CAF1 6357 113 - 1
AUCACUAUGUUCUGGUCUGGUCACACUAGGAGUACAACUUUUCCAGAGUUCCCAAGUGUGGCGGU-UAAGCCCUACAUUCUUAUUUUAAACAUGA----GAGUAAAAGCCUUUAAUUA
.............(((...((((((((.((.(...(((((.....)))))))).))))))))((.-....))....((((((((.......))))----))))....)))........ ( -23.40)
>DroSim_CAF1 6253 112 - 1
AUCACUAU-UUCUGGUCUGGUCACACUAGGAGUACAACUUUUCCAGAGUUGCCAAGUGUGGCGGU-UAAGCCCUACAUUCUUAUUUUAAACAUGA----AAGUAAAAGCCUUCAAUUA
.....(((-(((((((........))))))))))((((((.....))))))...(((((((.((.-....))))))))).............(((----(.((....)).)))).... ( -23.60)
>DroEre_CAF1 6457 104 - 1
AUCGGCGUGUUCGCAUCUGGUCACACCAGGCAUGCAACUUUUCCAGAGUUGCCAAGUGUGGCGGGAAAAACCCUACAUUCUC----UAAAUAUGAAAAAUAAUAACAG----------
....(((....)))..((((((((((..((((....((((.....))))))))..)))))))(((.....))).........----...................)))---------- ( -26.40)
>DroYak_CAF1 5485 105 - 1
AUCAGCUUAUUCGCAUAUGGUCACACUAGGCAUGCAACUUUUCCAGAGUAGCCAAGUGUGGCGGGAAAAGCCCUACAUUCUC-----AUAUAUAUAUAAAAAUAACAU-----UA---
....((......))(((((((((((((.(((.(((............)))))).))))))))(((.....)))........)-----)))).................-----..--- ( -26.60)
>consensus
AUCACCAUGUUCUGGUCUGGUCACACUAGGAGUACAACUUUUCCAGAGUUGCCAAGUGUGGCGGU_UAAGCCCUACAUUCUCA_UUUAAACAUGA____AAGUAAAAGCCUU_AAUUA
...................((((((((.((....((((((.....)))))))).))))))))((......)).............................................. (-16.66 = -17.10 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:03 2006