Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,308,947 – 3,309,067 |
Length | 120 |
Max. P | 0.656537 |
Location | 3,308,947 – 3,309,067 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.00 |
Mean single sequence MFE | -33.22 |
Consensus MFE | -24.40 |
Energy contribution | -23.60 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.42 |
Mean z-score | -1.81 |
Structure conservation index | 0.73 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3308947 120 - 23771897 GGCUAUCAGAACGAGAUCGCUGAACUGUAUAGCUACACGGAGUUCAGCGAGUUUCAGAUGAACGUGAAGGCCUUCGAGGACCAGAUGGAGCUGUACGACCUGCCGCCCAACUGGCAGAAG ((((.(((........((((((((((.(..........).))))))))))((((.....)))).))).))))(((...(.((((.(((.((.(((.....))).))))).))))).))). ( -39.40) >DroVir_CAF1 4324 120 - 1 AGCUAUCAAAAUGAAAUUGCCGAACUCUACAGUUACACGGAAUUCAGUGAAUUCCAAAUGAAUGUCAAGGCAUUUGAGGACCAAAUGGAUCUAUAUGAUCUGCCGCCAAAUUGGCAGAAG ................(((((((...............(((((((...))))))).............((((((((.....)))))(((((.....)))))...)))...)))))))... ( -28.20) >DroGri_CAF1 6357 120 - 1 AGCUAUCAGAAUGAAAUCGCCGAACUCUACAGUUACACAGAGUUCAGUGAAUUCCAAAUGAAUGUGAAAGCGUUCGAAGAUCAAAUGGAACUGUACGAUUUGCCACCGAAUUGGCAGAAA ......(((.......((((.(((((((..........))))))).)))).(((((...((((((....))))))(.....)...)))))))).....(((((((......))))))).. ( -33.50) >DroWil_CAF1 8927 120 - 1 ACCUAUCAGAAUGAAAUUGCCGAGCUUUAUAGCUACACGGAAUACAGUGAAUUCCAAAUGAAUGUCAAGGCAUUCGAGGAUCAAAUGGAAUUAUACAAUCUGCCGCCCAAUUGGCAGAAG ...................(((((((....))))...)))......((((((((((...((((((....))))))(.....)...))))))).)))..(((((((......))))))).. ( -30.80) >DroMoj_CAF1 4999 120 - 1 AGCUAUCAAAAUGAGAUCGCCGAACUUUACAGCUACACGGAGUUCAGUGAAUUCCAAAUGAAUGUUAAGGCAUUUGAGGACCAAAUGGAACUAUAUGAUUUGCCACCGAAUUGGCAGAAA .....(((....(((.((((.(((((((..........))))))).)))).)))((((((..(....)..))))))((..((....))..))...)))(((((((......))))))).. ( -27.40) >DroAna_CAF1 5574 120 - 1 GGCUACCAGAACGAGAUCGCAGAACUCUACAGCUACACGGAGUUCGUCGAGUUCCAAAUGAACGUGAAAGCGUUCGAGGAUCAGAUGGAGCUCUACGACCUGCCUCCCAAUUGGCAGAAA ((((.(((...(..((((...((((((.((((((......)))).)).))))))....(((((((....)))))))..)))).).))))))).......(((((........)))))... ( -40.00) >consensus AGCUAUCAGAAUGAAAUCGCCGAACUCUACAGCUACACGGAGUUCAGUGAAUUCCAAAUGAAUGUGAAGGCAUUCGAGGACCAAAUGGAACUAUACGAUCUGCCGCCCAAUUGGCAGAAA .....(((....(((.((((.(((((((..........))))))).)))).)))....(((((((....))))))).........)))..........(((((((......))))))).. (-24.40 = -23.60 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:02 2006