Locus 1133

Sequence ID 3L_DroMel_CAF1
Location 3,302,766 – 3,302,868
Length 102
Max. P 0.828789
window1765

overview

Window 5

Location 3,302,766 – 3,302,868
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 94.77
Mean single sequence MFE -23.27
Consensus MFE -20.38
Energy contribution -19.93
Covariance contribution -0.44
Combinations/Pair 1.04
Mean z-score -2.37
Structure conservation index 0.88
SVM decision value 0.71
SVM RNA-class probability 0.828789
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3302766 102 - 23771897
UCACUAUGACAGUGUGACCAGCACUUACUUUCAAUACUUUUCAGUGGAUAAAACAAUAUCGAUAUGUCGAUAGUAACUGAUACUAUCGAACGCUGAUAACCC
......(((.((((((.....)))..))).))).......((((((((((......))))......(((((((((.....))))))))).))))))...... ( -24.20)
>DroSec_CAF1 8425 102 - 1
UCACCAAGACAGUGUGGCCAGCACUUACUUUCUUUACUUUUCAGUGAAUGAAACAAUAUCGAUAUGUCGAUAGUAACUGAUACUAUCGAACGCUGAUAACCC
(((((......).)))).((((......((((((((((....)))))).)))).............(((((((((.....)))))))))..))))....... ( -22.80)
>DroSim_CAF1 8791 102 - 1
CCACCAAGACAGUGUGACCAGCACUUACUUUCUUUACUUUUCAGUGAAUGAAACAAUAUCGAUAUGUCGAUAGUAACUGAUACUAUCGAACGCUGAUAACCC
.........((((((.............((((((((((....)))))).)))).............(((((((((.....)))))))))))))))....... ( -22.80)
>consensus
UCACCAAGACAGUGUGACCAGCACUUACUUUCUUUACUUUUCAGUGAAUGAAACAAUAUCGAUAUGUCGAUAGUAACUGAUACUAUCGAACGCUGAUAACCC
......(((.((((((.....)))..))).))).......((((((.......(......).....(((((((((.....))))))))).))))))...... (-20.38 = -19.93 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:00 2006