Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,299,346 – 3,299,449 |
Length | 103 |
Max. P | 0.911666 |
Location | 3,299,346 – 3,299,449 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.35 |
Mean single sequence MFE | -33.06 |
Consensus MFE | -19.01 |
Energy contribution | -18.45 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.33 |
Mean z-score | -2.09 |
Structure conservation index | 0.58 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3299346 103 + 23771897 GCAGUGCCAGUCUGAAGUGCUGGUGCGAACAAUGCUGAGGAUCCUC--AUCGUCCAAUAUGUUUGA---CACAUAUG------------UGUGUCAUAUGUUUUUUAUUGUUUUGAAAAG ...(..(((((.......)))))..)((((((((.((((....)))--)......((((((..(((---((((....------------)))))))))))))...))))))))....... ( -29.60) >DroSim_CAF1 5292 120 + 1 GCAGUGCCAGUCUGAAGUGCUGGUGCGAACAAUGCUGAGGAUCCUCACAUCGGCCAACGUGCUCAAAUUUACAUAUGGUUGUCCGCAUAUGUUUAAUGUAUUUUUUAUUGUUUUGAAAAG ((((..(((((.......)))))..)(((((((((((((....))))...((((((..(((........)))...))))))...)))).)))))..)))..((((((......)))))). ( -29.80) >DroEre_CAF1 5200 114 + 1 GCAGUGCCAGCCUGAAGUGCUGGUGCGAACAAUGCUGAGGCCCCUC--AGCUCUCAACGUGUUCAUAUUCA----GGAUUGUCCACACAUGCUUGAUGUGUUUUUUAUUGUUUUGAAAAA ...(..((((((....).)))))..)(((((..((((((....)))--)))........)))))...((((----((((.....((((((.....))))))........))))))))... ( -37.52) >DroYak_CAF1 4505 114 + 1 GCAGUGCCAGCCUGAAGUGCUGGUGCGAAAACUGCUGAGGUCCCUC--AGCUCUCAAAGUGUUCAUAUUCU----GGAAUAUCCACACAUGUUUCAAGCAUUUUUUAUUGUUUUAAAAAA ((.(..((((((....).)))))..)((((...((((((....)))--))).......((((..(((((..----..)))))..))))...))))..)).(((((((......))))))) ( -35.30) >consensus GCAGUGCCAGCCUGAAGUGCUGGUGCGAACAAUGCUGAGGACCCUC__AGCGCCCAACGUGUUCAAAUUCA____GGAUUGUCCACACAUGUUUCAUGUAUUUUUUAUUGUUUUGAAAAA ((((..((((((....).)))))..)(((((.((.((((((........)).)))).))))))).........................)))........(((((((......))))))) (-19.01 = -18.45 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:57 2006