Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,290,368 – 3,290,480 |
Length | 112 |
Max. P | 0.820307 |
Location | 3,290,368 – 3,290,480 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.54 |
Mean single sequence MFE | -36.64 |
Consensus MFE | -32.98 |
Energy contribution | -33.06 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.32 |
Structure conservation index | 0.90 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3290368 112 + 23771897 CAAACUGGCUUAGUAACCCACAUAAACACCACCGA--------AUCCGAGUCCCAGUUGUCCGGGGGCAAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA .....((((((...................((((.--------...)).)).(((((..(((((..(((.((((((((.......)))))))))))..))))))))))..)))))).... ( -37.80) >DroSec_CAF1 20092 120 + 1 CAAACUGGCUUAGUAACCCACAUAAACACCACCGAAUCCCCGAAUCCGAGUCUCAGUUGUCCGGGGGCUAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA .....((((((.....................((......))........((.((((..(((((..((.(((((((((.......)))))))))))..))))))))))).)))))).... ( -35.50) >DroSim_CAF1 20908 120 + 1 CAAACUGGCUUAGUAACCCACAUAAACACCACCGAAUCCCCGAAUCCAAGUCCCAGUUGACCGGGGGCAAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA .....((((((.....................((......))..........((((((..((((..(((.((((((((.......)))))))))))..))))))))))..)))))).... ( -36.50) >DroEre_CAF1 22174 112 + 1 CAAACUGGCUUAAUAACCCACAUAAACACCACCGA--------AUCCGAGUCCCAGUUGUCCGGGGGCAAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA .....((((((...................((((.--------...)).)).(((((..(((((..(((.((((((((.......)))))))))))..))))))))))..)))))).... ( -37.80) >DroYak_CAF1 22786 112 + 1 CAAACUGGCUUAGUAACCCACAUAAACACCACCGA--------AUCCGAGUCCCAGUUGUCCGGGGGCAAUUGGGCGGAGAAUACCCGUUCGGUGCAACUGGAGCUGGAGAGGGCAAUUA ....(..((((.((.....))........((((((--------(((((...((((((((((....))))))))))))))(......).)))))))......))))..)............ ( -35.60) >consensus CAAACUGGCUUAGUAACCCACAUAAACACCACCGA________AUCCGAGUCCCAGUUGUCCGGGGGCAAUUGGGCGGAGAAUACCCGUUCAGUGCAACUGGAGCUGGAGAGGCCAAUUA .....((((((...............(......)..................(((((..(((((..((.(((((((((.......)))))))))))..))))))))))..)))))).... (-32.98 = -33.06 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:41 2006