Locus 1122

Sequence ID 3L_DroMel_CAF1
Location 3,289,594 – 3,289,698
Length 104
Max. P 0.587949
window1744

overview

Window 4

Location 3,289,594 – 3,289,698
Length 104
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.15
Mean single sequence MFE -22.36
Consensus MFE -15.38
Energy contribution -15.66
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.76
Structure conservation index 0.69
SVM decision value 0.11
SVM RNA-class probability 0.587949
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3289594 104 + 23771897
UUAUCGACGCCACUUCAUGCAAAUUGGAGAAAUUCAGGUGGAUAUAUUUUUAGCUGACACAUCCAUGCAAUGUUUGCAAAUG---------CAUAUAU-------AGUAUUCACCUUUCU
............(((((.......)))))......((((((((((.......((((.......)).)).((((.(((....)---------)).))))-------.)))))))))).... ( -21.40)
>DroSec_CAF1 19376 94 + 1
UUAUCGACGCCACUUCAUGCAAAUUGGAGAAAUUCAGUUGGAUAUAUUUUUAGCUGACACAUCCAUGCAAUGUUUGCAAAUG---------CAUAUAU-------AGUAU----------
...........(((..(((((...((((.....(((((((((......)))))))))....))))((((.....))))..))---------)))....-------)))..---------- ( -21.80)
>DroSim_CAF1 20178 94 + 1
UUAUCGACGCCACUUCAUGCAAAUUGGAGAAAUUCAGUUGGAUAUAUUUUUAGCUGACACAUCCAUGCAAUGUUUGCAAAUG---------CAUAUAU-------AGUAU----------
...........(((..(((((...((((.....(((((((((......)))))))))....))))((((.....))))..))---------)))....-------)))..---------- ( -21.80)
>DroEre_CAF1 21334 119 + 1
UUAUCGACGCCACUUCAUGCAAAUUGAAGAAAUUCAGUUGGAUAUAUUUUUAGCUGGCACAUCCAUGCAAUAUUUGCAAAUGCC-CCAGUGCAUAUAUCGUAUAUCGUAUUCACCUCUCU
................((((.(((((((....))))))).(((((((.....(((((..(((...((((.....)))).)))..-)))))..)))))))))))................. ( -25.20)
>DroYak_CAF1 21977 113 + 1
UUAUCGACGCCACUUCAUGCAAAUUGCAGAAAUUCAGUUGGAUAUAUUUUUAGCUGACACAUCCAUGCAAUGUUUGCAAAUGCCUCUAGUGCAUAUAU-------AGUAUUCACCUCUCU
......((.........(((((((((((.....(((((((((......)))))))))........))))..))))))).(((((....).))))....-------.))............ ( -21.62)
>consensus
UUAUCGACGCCACUUCAUGCAAAUUGGAGAAAUUCAGUUGGAUAUAUUUUUAGCUGACACAUCCAUGCAAUGUUUGCAAAUG_________CAUAUAU_______AGUAUUCACCU_UCU
.................(((((((((((.....(((((((((......)))))))))....))))......))))))).......................................... (-15.38 = -15.66 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:40 2006