| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 379,311 – 379,414 |
| Length | 103 |
| Max. P | 0.671227 |
| Location | 379,311 – 379,414 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.18 |
| Mean single sequence MFE | -34.47 |
| Consensus MFE | -22.72 |
| Energy contribution | -23.37 |
| Covariance contribution | 0.65 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 379311 103 + 23771897 AAGAGCAGAGGGGCCAAAUCCAUCUUGGUCACUUUUAGGGGAUGAUAUCCGCCGGCGGAAGUGGCAAAGUCGAAAGGGAAGCCGACU-------------UGGAGAUGGAGUUUCU ........((..((....((((((((.(((((((((.((((((...)))).))...))))))))).((((((..........)))))-------------).))))))))))..)) ( -36.00) >DroSec_CAF1 33429 103 + 1 AAGAGCAGAGGGGCCAAGUCCAUCCUGGUCACUUUUAGGGGAUGAUAUCCGCCGGCGGAAGUGGCAAAGUCGAAAGGGAAGCCGGCU-------------UGGAGAUGGAGUUUCU ......(((((..(((..((((..(((((..(((((.((((((...))))((((.(....)))))....)).)))))...)))))..-------------))))..)))..))))) ( -34.60) >DroSim_CAF1 34164 103 + 1 AAGAGCAGAGGGGCCAAAUCCAUCUUGGUCACUUUUAGGGGAUGAUAUCCGCCGGCGGAAGUGGCAAAGUCGAAAGGGAAGCCGGCU-------------UGGAGAUGGAGUUUCU ........((..((....((((((((.(((((((((.((((((...)))).))...))))))))).((((((..........)))))-------------).))))))))))..)) ( -35.40) >DroEre_CAF1 34781 116 + 1 AAGAGCAGAGGGGCCUUAUCCAUCUUGGUCACUUUUAGGGGAUGAUAUCCGCCGGCGGAAGUGGCAAAGUCGAAGGGGAAGCCGGCAGCCGGCUAUGGAGUUGAGAUGGAGUUUCU ........((..((....(((((((..(((.(((((...((((...))))((((.(....)))))......)))))...((((((...))))))...)).)..)))))))))..)) ( -39.90) >DroYak_CAF1 35241 103 + 1 AAGAGCAGAGGAGCCUAAUCCAUCUUGGUCACUUUUAGGGGAUGAUAACCGCCGGCGGAAGUGGCAAAGUCGAAAGGGAAGCCGGCU-------------UCGAGAUGGAGUUUCU ........((((((....((((((((((((((((((.((((.......)).))...))))))))).((((((..........)))))-------------)))))))))))))))) ( -34.80) >DroAna_CAF1 29884 97 + 1 GAGAUGAUA-----UUUUUUCAUUUGGGU-GUAUUUGGGGGUUGACUUUUGCCGGCGGAAGUUGUGCGGUCGAAAAGGAAGCCGAGC-------------UCAAGAUUGAGUUUCG .((((((..-----.....)))))).(((-...(((.....((((((...((((((....)))).)))))))).)))...)))((((-------------(((....))))))).. ( -26.10) >consensus AAGAGCAGAGGGGCCAAAUCCAUCUUGGUCACUUUUAGGGGAUGAUAUCCGCCGGCGGAAGUGGCAAAGUCGAAAGGGAAGCCGGCU_____________UGGAGAUGGAGUUUCU ........((((((....((((((((.(((((((((.((((.......)).))...)))))))))..(((((..........)))))...............)))))))))))))) (-22.72 = -23.37 + 0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:45 2006